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GrainGenes Sequence Report: BG604507

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Sequence
BG604507
Contig
Ta.506.1.S1_a_at
NSFT03P2_Contig18751
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC301199
wEST map position
BG604507
NCBI UniGene
Ta.32936
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001065862.1 Os11g0171300 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
4DS
Clone Library
Wheat vernalized crown cDNA library
Tissue
Crown tissue of seedling
Developmental Stage
Five-week old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0834_E03_I06ZS Wheat vernalized crown cDNA library Triticum aestivum cDNA clone WHE0834_E03_I06, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE0834_E03_I06
Probe
WHE0834_E03_I06
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were germinated and grown at 4 C for 5 weeks. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.506.1.S1_a_at1094WHE2AFFY
Ta.20429.2.S1_at200WHE2AFFY
Ta.20429.2.S1_at88WHE2AFFY
TaAffx.25738.1.S1_x_at151WHE2AFFY
TaAffx.25738.1.S1_x_at143WHE2AFFY
DNA
ggtagcacctgatctgcttgcttccagaaacaatggcgtctgctactctc
ctcaaatcgtctttccttcccaagaaggccgaatggggcaccacgcgcca
ggccgccgcccccaagccggtgaccgtctccatggttgtccgtgccagcg
catacgccgatgagcttgtcaaaaccgcgaaaaccatcgcatcgccaggc
aggggtatccttgccatggatgagtcgaatgccacctgtggcaagagact
tgcctcgattggccttgagaacaccgaggctaaccgccaggcttaccgga
cccttcttgtcactccaccaggcttgggaaactacatctctggtgctatc
ctctttgaggagacgctctaccagtcgactgttgatggaaagaagattgt
tgacatccttgtcgagcagggaatcgttcccggtatcaaggttgacaagg
gtcttgtgccacttgttggttccaatgatgagtcgtggtgccaaggtctc
gatggccttgcctcccgtgaagcagcatactaccagcaaggcgctcgctt
cgccaagtggcgcactgttgtcagcattcctaacggcccatctgagcttg
ctgtcaaagaagctgcctggggtcttg

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