GrainGenes Sequence Report: BG414545

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Sequence

BG414545

External Databases

Data at GenBank

Data at EMBL

Data at DDBJ

DB Remark

Locus Source: Hordeum vulgare subsp. vulgare

Keyword

EST

Species

Hordeum vulgare subsp. vulgare

Cultivar

Morex

Clone Library

Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal)

Tissue

testa/pericarp

Data Source

genbank	Release 135, Apr 15 2003
genbank	Updated Nov 2006

Title

HVSMEk0002N08f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEk0002N08f, mRNA sequence.

Strain

lab_host TJC121

vulgare

Clone

HVSMEk0002N08f

Probe

[BG414545.1]

{SpCl-281}

Remark

DB_xref: taxon:112509

Feature: source: mol_type = 'mRNA';

Locus Comment: Contact: Wing RA; Clemson University Genomics Institute; Clemson University; 100 Jordan Hall, Clemson, SC 29634, USA; Tel: 864 656 7288; Fax: 864 656 4293; Email: rwing@clemson.edu; Total hq bases = 123; Seq primer: AATTAACCCTCACTAAAGGG; High quality sequence stop: 317.

Note: Vector: lambdaZAP; Site_1: EcoR1; Site_2: Xho1; Plants were raised from seeds in a Controlled Environments growth chamber maintained in continuous light at 18oC, and testa and pericarp were dissected from developing kernels at Washington State University, Pullman, WA (Kannangara, von Wetstein). Total RNA was prepared, poly(A) RNA was purified, one cDNA library was made, and 1 million pfu were in vivo excised to give pBluescript SK(-) cDNA phagemids in the TJ Close lab at the University of California, Riverside (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang). Phagemids were plated and picked at the Clemson University Genomics Institute (CUGI) (Begum, Palmer, Frisch, Atkins and Wing). Plasmid DNA preparations, DNA sequencing and sequence analysis were performed at CUGI (Wing, Yu, Frisch, Henry, Simmons, Oates , Rambo, Main). The sequence has been trimmed to remove vector sequence and contains a minimum of 100 bases of phred value 20 or above. For more details on library preparation and sequence analysis see http:

Note: Vector: lambdaZAP; Site_1: EcoR1; Site_2: Xho1; Plants were raised from seeds in a Controlled Environments growth chamber maintained in continuous light at 18oC, and testa and pericarp were dissected from developing kernels at Washington State University, Pullman, WA (Kannangara, von Wetstein). Total RNA was prepared, poly(A) RNA was purified, one cDNA library was made, and 1 million pfu were in vivo excised to give pBluescript SK(-) cDNA phagemids in the TJ Close lab at the University of California, Riverside (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang). Phagemids were plated and picked at the Clemson University Genomics Institute (CUGI) (Begum, Palmer, Frisch, Atkins and Wing). Plasmid DNA preparations, DNA sequencing and sequence analysis were performed at CUGI (Wing, Yu, Frisch, Henry, Simmons, Oates, Rambo, Main). The sequence has been trimmed to remove vector sequence and contains a minimum of 100 bases of phred value 20 or above. For more details on library preparation and sequence analysis see http:

DNA

gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagacagagt
gcgagagagacacctgctcttcgtctggagggaccgctgcgccttcggcc
ccctcaagaaccagcgctcgtgcgggtcgtgctgctcgttcgccgcctcc
ggtgcgttcgaggggcccatcttcctcgtctcgggctatatggtggtgct
ctccgatcactggctggtcttttgctacctcctttgcgatccttgtgagc
ctggttcgtgtgatgctgcatgcaacagtgggttgcttacttnnctctcc
agctctctgttgatgtctggcggccttgctagacagtgggctttccctcc
caccgggagagtgcggccctgcttatatnnttgtcccccattcctgcttt
cctcctgccctactgctttgtccctgcttatgaagatcttcttgctgccc
cccttgtgctatctgcccctcggccgtgggcatctctgcctcctacttgc
gaccatccgttcgcgggttctccttccccgttcttcttggctggcctcct
tacaccgccctggtcttttnnnnnntggcccggctgtgcccttttgcgct
tttgcccgtcctcatgcgcaccctttacggtctcctcgtcccccccttgg
gctgcgtcctgtgcggtgctgtggtcctcttctgcattcccgggggcctt
tccgtcgcgtgctcatgttctttattcttctccctcttgttcccggtgtt
ttttcctctttctcg


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