Query (optional)   in Class  

GrainGenes Sequence Report: TaAffx.51190.1.S1_at

[Submit comment/correction]

Sequence
BG263213
Contig
TaAffx.51190.1.S1_at
Tracefile
[ Download ]
[ View ]
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC292497
wEST map position
BG263213
NCBI UniGene
Ta.11152
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001050064.1 Os03g0340500 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
4AS
4BL
4DL
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE2339_D06_H11ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2339_D06_H11, mRNA sequence.
Other Name
WHE2339_D06_H11ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE2339_D06_H11
Probe
WHE2339_D06_H11
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
TaAffx.51190.1.S1_at696WHE2AFFY
TaAffx.51190.1.S1_at597WHE2AFFY
Ta.4274.1.S1_at52WHE2AFFY
DNA
gcacgagctcaacgtcgaacagctcagcgtgtcggagtatctccgcttca
aggaggagctcgtcgacggccagcacaacgaccccttcgtgctggagctt
gattttgagccattcactgccttaatcccacgtccgagtcgctcgtcgtc
gattggaaatggcgtgcagtttctcaacaggcacctgtcttcgattttgt
tccgcaacagggattgcctggaacccctgcttgatttccttcgcgagcac
cggcacaaggggcatgtgatgatgttaaatgacaggatacagagcgtggg
aaggcttcagtctgtcctgaccaaagctgaggagcacctgtcaaagctcc
cagctgaaacaccatactta

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.