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GrainGenes Sequence Report: BG262967

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Sequence	BG262967
Contig	Ta.10947.1.S1_at Ta.10947.2.S1_a_at NSFT03P2_Contig17728
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC291621
wEST map position	BG262967
NCBI UniGene	Ta.54404
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001061135.1 Os08g0179900 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	6AS
Clone Library	Wheat 5-15 DAP spike cDNA library
Tissue	Spike
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0939_D11_H21ZS Wheat 5-15 DAP spike cDNA library Triticum aestivum cDNA clone WHE0939_D11_H21, mRNA sequence.
Other Name	WHE0939_D11_H21ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA018E1X
Clone	WHE0939_D11_H21
Probe	MAG1480 WHE0939_D11_H21
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.10947.1.S1_at 381 WHE2AFFY Ta.10947.1.S1_at 178 WHE2AFFY Ta.10947.2.S1_a_at 363 WHE2AFFY Ta.10947.2.S1_a_at 78 WHE2AFFY
DNA	ccatcagccatgggaggaggcgtcatgcgcaccgccgcgaagtcggcctc gctgggggcgccgcggcggcggcgggacgcttccgcaacgtcgccccgtc cttcgccacggcccccgccgccgaggccgccgcggcggcgccgctgctgt ccgcggccggggagatccccgcggtggcgccggccgggtcgcagtgggcg tcctgggaggtggacgactgggagttcgcggactggaggtccgagtcggc gtccgaggcggacgtggcggtggtcggggggccgaggctggtgttcnccc cgccgtcgcgggaggaggccgaggaggccaccgccgagctccgggaagct attgacagggtttattttaaagagactcc

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