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GrainGenes Sequence Report: BG262870

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Sequence	BG262870
Contig	Ta.25236.1.A1_at NSFT03P2_Contig6519
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC336312
wEST map position	BG262870
NCBI UniGene	Ta.25236
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus'
Keyword	EST
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	1DS 2BL 4AL 5AS
Clone Library	Wheat 5-15 DAP spike cDNA library
Tissue	Spike
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0948_C08_F16ZS Wheat 5-15 DAP spike cDNA library Triticum aestivum cDNA clone WHE0948_C08_F16, mRNA sequence.
Other Name	WHE0948_C08_F16ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
Clone	WHE0948_C08_F16
Probe	MAG688 WHE0948_C08_F16
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.25236.1.A1_at 854 WHE2AFFY Ta.25236.1.A1_at 519 WHE2AFFY Ta.24012.1.A1_at 58 WHE2AFFY Ta.24012.1.A1_at 52 WHE2AFFY
DNA	tgctcacaccgctggtgctgtagtgcatgaccaagtaccacgaggcgcct gacatgtctttggtcaccgccaaggtctacaagctcttcttggaggtgta taactccgtcgacaatgttccgcatccctgccaacatctccgtctccatg gcccaggctgcaacacctaccatgaagcttcagcgcctgctgctagcaca tgaagcgctcgtgcattgaattgttttagtcagagttcagataactgaat cagagaggttgctctagagctgcagtagtatacttcaaagttcggataac tgaatgctacttcagatttcagctgactgaatgctcggccactggaagct gaacgctagaagctctaaaaagatattcagaagttcgaagaatactttca tagaagttcaaaattaagaaagagcattagaaaagcagttattaaaataa aaattaatgcg

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