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GrainGenes Sequence Report: TaAffx.91570.1.S1_s_at

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Sequence	BG262275
Contig	TaAffx.91570.1.S1_s_at NSFT03P2_Contig3321
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC312213
wEST map position	BG262275
NCBI UniGene	Ta.39422
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001058900.1 Os07g0150500 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	6AS 6DS
Clone Library	Wheat 20-45 DAP spike cDNA library
Tissue	Spike and seed
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0873_G11_N21ZS Wheat 20-45 DAP spike cDNA library Triticum aestivum cDNA clone WHE0873_G11_N21, mRNA sequence.
Other Name	WHE0873_G11_N21ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA017E1X
Clone	WHE0873_G11_N21
Probe	WHE0873_G11_N21
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 20 DAP and seeds at 30 to 45 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 20 DAP and seeds at 30 to 45 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	TaAffx.91570.1.S1_s_at 1116 WHE2AFFY TaAffx.91570.1.S1_s_at 436 WHE2AFFY TaAffx.59727.1.S1_at 192 WHE2AFFY TaAffx.59727.1.S1_at 56 WHE2AFFY TaAffx.59727.1.S1_at 131 WHE2AFFY
DNA	cggtcgcacctcacctggctggaacccgcatcgaggtcgacggcgcccgc catgagagaggaggtcaggagctcgtcggcggcgcccgcggacccgccgc tgcgctcagactcgccgcccgccaccccggtcgccagttctgccggtgct tcatctcctcccgcgcaaacaaatgtagctaccatagattggttaggcag cgagcagttatctaaagttgggtcatcgtcccatgttgcttcacatgctg ctcagccatctcttagtactaatgctgttggtgctgctatggatttttcg caaccatcatatagaccatgggaacgaggagatttacttcatcgactggc cacatttaagccttcaacatgggcttctaaaccaaaggctgctagttcac tggcctgtgctcaaaggggctgggtgaacattggtgtggacaaaattgaa tgcgactcatgtggcgcacatctgatatttactgcattgacatcctggtc ccccgctgaagttgcaaatgctggagaagcctntgctgaacagcttgatg catcgcaccaaaatgattgtccctggagagggaatagctgtgctgatagc ttggtgcagctccacttcacaccatc

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