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GrainGenes Sequence Report: BF627942

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Sequence	BF627942
External Databases	Data at GenBank Data at EMBL Data at DDBJ
NCBI UniGene	Hv.26377
DB Remark	Locus Source: Hordeum vulgare subsp. vulgare UniGene title 'CDNA clone: FLbaf48j15, mRNA sequence'
Keyword	EST
Species	Hordeum vulgare subsp. vulgare
Cultivar	Morex
Clone Library	Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress)
Tissue	Seedling shoot
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	HVSMEb0006M21f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0006M21f, mRNA sequence.
Strain	lab_host TJC121 vulgare
Clone	HVSMEb0006M21f
Probe	baak13g18
Remark	DB_xref: taxon:112509 Feature: source: mol_type = 'mRNA'; Locus Comment: On Dec 19, 2000 this sequence version replaced gi:11892100.; Contact: Wing RA; Clemson University Genomics Institute; Clemson University; 100 Jordan Hall, Clemson, SC 29634, USA; Tel: 864 656 7288; Fax: 864 656 4293; Email: rwing@clemson.edu; Total hq bases = 463; Seq primer: AATTAACCCTCACTAAAGGG; High quality sequence stop: 701. Note: Vector: lambdaZAP; Site_1: EcoR1; Site_2: Xho1; Seeds were surface sterilized then germinated under axenic conditions in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were incubated at 90% RH for 24 hr. Shoots were then harvested, total RNA was prepared, poly(A) RNA was purified, one primary unamplified cDNA library was made, 600000 pfu were in vivo excised to give pBluescript SK(-) cDNA phagemids. These steps were performed in the TJ Close laboratory at the University of California, Riverside (Choi, Close, Fenton). Phagemids were plated and picked at the Clemson University Genomics Institute (CUGI) (Begum, Palmer, Frisch, Atkins and Wing). Plasmid DNA preparations, DNA sequencing and sequence analysis were performed at CUGI (Wing, Yu, Frisch, Henry, Simmons, Oates, Rambo, Main). The sequence has been trimmed to remove vector sequence and contains a minimum of 100 bases of phred value 20 or above. For more details on library preparation and sequence analysis see http:
DNA	cggcgggaggtcaccaccactactattgctagcttgatcgaaatggcccg ttctgcagctactcagctcgtgctggtcgccatggtggccgctatgctcc tcgtagccgccgacgcagccatctcctgcggtcaggtgagctctgccttg cgcccctgcatttcctatgccagcggcaacggcggcatcctgcctccggc ctgctgcagcggcgtcaagagattggccggcgcagcgcagagcaccgctg acaagcaagcggtgtgcaagtgcatcaagagcgctgccgctgggttaaac gctggcaaggccgccggcatcccctccaagtgcggcgtcagcgtccccta ctccatcagcacttccgtcgactgctctaagattcactgatcgaccactt gctgccgtcgtttctgcctatagctccagctatcgatgctgagacgctga gtacgttgaggttatttacacaacctcacacacacacacacacacatata tttgaataaatgatctcatatattatctccatgtgggagaaaaatagaga gaagtacttacgttgagccagctctgcatggccaacactctgggagatcc atggtaaatataattaaatgtacgttcgttgagaagaatcgagaggtagg gagactgtgtaccatgtgcgcttgtggaatatggcaaaaaaaaaaaaaaa aaaaaataactcgaggggggacgggtgccgaatacggcctaattg

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