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GrainGenes Sequence Report: NSFT03P2_Contig3637

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Sequence
BF484507
Contig
Ta.11931.1.S1_at
NSFT03P2_Contig3637
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC359306
wEST map position
BF484507
NCBI UniGene
Ta.11931
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001057968.1 Os06g0590600 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
6AL
6DL
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE2324_D08_H16ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2324_D08_H16, mRNA sequence.
Other Name
WHE2324_D08_H16ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE2324_D08_H16
Probe
WHE2324_D08_H16
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.11931.1.S1_at1011WHE2AFFY
Ta.11931.1.S1_at472WHE2AFFY
TaAffx.85443.1.S1_at72WHE2AFFY
DNA
ctacgacacgctcgtcagcgcgtctcaaaaagccggcgtgcccacctcaa
gtcgtcgtcggcgagatcggctggcccaccgacggcaacaagaacgccaa
cgccaagctcgcgcggcgcttctacgacggcctcctcaagaagctgggca
agaacgagggcacccacctccggccgggcaagctggacgtctacctcttc
ggcctcttcgacgaggacatgaagagcatcgcgccgggcaacttcgagcg
ccactggggcatcctcacctacgacggcaagcccaagttcagcatggacc
tgtcggggcaagggaacgacaggcggctcgccgccgtgtccggcgtggag
tacctgcccaagcagtggtgcgtgttcgacgacgaggccgcaaaggacga
ggacatggacaagctgggggggaacatccagtacgcctgcgccagcggcg
actgcacggcgctgggctacggctgctcctgcaacggcctcgacgagatg
agcaacatctcctacgccttcaacatgtact

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