GrainGenes Sequence Report: Ta.11930.1.S1_at
Sequence
BF484496
Contig
Ta.11930.1.S1_at NSFT03P2_Contig7052
Tracefile
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External Databases
Data at GenBank Data at EMBL Data at DDBJ
wEST map position
BF484496
NCBI UniGene
Ta.7332
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001065068.1 Os10g0517400 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
1DL
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE2324_B12_D24ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2324_B12_D24, mRNA sequence.
Other Name
WHE2324_B12_D24ZS [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE2324_B12_D24
Probe
WHE2324_B12_D24
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.11930.1.S1_at 1061 WHE2AFFY Ta.11930.1.S1_at 551 WHE2AFFY Ta.7332.1.S1_at 502 WHE2AFFY Ta.7332.1.S1_at 398 WHE2AFFY
DNA
cttttgcaggtcatcattagaaaggttacagatcgatcggctcggaatag
ggcagctgcattggtctactgctaactatgcacctctgcaggagcgcgct
ctctgggacggtctagttgaaatgtatgacaagggtcttgtccgagccgt
gggtgtgagcaattatgggccgaagcagcttgtgaagatccacagctacc
tagcatccagaggtgcagttctcgctgctgagcatgggcgatgagcagat
ggagctgaaaaccgtgtgcgattccctgggtgttcagctaatcgcttata
gccctcttgggttgggcatgctcaccgggaaatatgacgcctctaacctt
ccaaatgggccaagatctgtgttgttccggcagattcttcctgggctgga
atccctgctgtcttgcttgaagagtattgccgaccgaaagggcaaaacca
tgtcccangtggctataaactggtgcgtttgcaaaggcgcaattccgatt
cccggcgtgaagacagtgaggcacgtggaggacaactt
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: Ta.11930.1.S1_at
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||