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GrainGenes Sequence Report: NSFT03P2_Contig10300

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Sequence
BF483007
Contig
Ta.5872.1.S1_at
NSFT03P2_Contig10300
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC340936
wEST map position
BF483007
NCBI UniGene
Ta.5872
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001060782.1 Os08g0104900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
7DL
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE2313_F04_K07ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2313_F04_K07, mRNA sequence.
Other Name
WHE2313_F04_K07ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE2313_F04_K07
Probe
[BF483007.1]
MAG2281
WHE2313_F04_K07
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.5872.1.S1_at359WHE2AFFY
Ta.5872.1.S1_at295WHE2AFFY
TaAffx.113259.1.S1_at182WHE2AFFY
Ta.9205.1.S1_at159WHE2AFFY
Ta.9205.1.S1_a_at159WHE2AFFY
DNA
ggcggcgccgcctcaagttctcagctttctagaaccttctagaagaaccg
ccgatgccttacagaatgggtcgtccagagaggagttttcgatggattaa
ttgattattaattaattgattccggaacgccggccggtttcggtttcttc
cctgggccttggccttcttcttcatcttcttcatcttctttcggaagagg
cgcgatggaggatgggaagatggggaacgtggcgacggtccgggcggtgc
tcgccatcctccaatggtggggcttcaacgtcaccgtcctcatcatcaac
aagtggatcttccagaaactggagttcaaattccctctgaccgtgtcgtg
tgtccacttcatatgctcttctcttggagcc

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