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GrainGenes Sequence Report: BF474619

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Sequence	BF474619
Contig	TaAffx.128570.1.S1_at NSFT03P2_Contig12999
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC314829
wEST map position	BF474619
NCBI UniGene	Ta.40515
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, weakly similar to NP_001067535.1 Os11g0225000 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	4AL 4DS
Clone Library	Wheat salt-stressed crown cDNA library
Tissue	Crown
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE2108_B03_D06ZS Wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_B03_D06, mRNA sequence.
Other Name	WHE2108_B03_D06ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA038E1X
Clone	WHE2108_B03_D06
Probe	WHE2108_B03_D06
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown under hydroponic conditions at UC Davis, salt stressed for 12 hours, and for 7 days, then dissected and frozen (Akhunov in J Dvorak Lab). Total RNA and poly(A) RNA were prepared from crown tissue, equal portions of RNA were pooled from the two treatments, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab at the University of California, Riverside (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	TaAffx.128570.1.S1_at 1001 WHE2AFFY [ Show all 10 ]
DNA	cagcggccagcggtcctcacgcgctacagatcccccgccttctttgaaag gaagacttgaggaagactcaagtcaactcaacccagatcccgttgggttc atttatatgcaactccggctagcaacgaaacattcatctcagaatcctca tccccatttccttgttctgttcccagcttctagcacagctcaagtgttcc atcttctccagtactatatatatcgtcagaaatgaataccgaagggaacg ggcagagtgttctaagcacattacccaaggaactaccgttagacttcttg aggactatcacaaatcagttctcagaggaccgtgttcttggtacaggtgc atttggaacagtttatacgggaattctgccagatggacaacacattgctg tgaagaggctttccgaaaatgctcccctcccacgtgacaaagcaattacc aatgaggttcagaatatcatggctctcaaacatgacaacatagtaaagct ggttgggttttgccatgaaggacagaagaaagtagtactgaacaatggga ggtatattgttgcagatgtttttgaaagcctactctgctatgagtattta ccc

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