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GrainGenes Sequence Report: Ta.9583.1.S1_x_at

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Sequence
BF474090
Contig
Ta.9583.1.S1_x_at
NSFT03P2_Contig14691
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC280363
wEST map position
BF474090
NCBI UniGene
Ta.9583
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001051264.1 Os03g0748000 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
5AL
5BL
5DL
Clone Library
Wheat vernalized crown cDNA library
Tissue
Crown tissue of seedling
Developmental Stage
Five-week old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0840_H11_P22ZS Wheat vernalized crown cDNA library Triticum aestivum cDNA clone WHE0840_H11_P22, mRNA sequence.
Other Name
WHE0840_H11_P22ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA016E1X
Clone
WHE0840_H11_P22
Probe
WHE0840_H11_P22
Cad5B
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were germinated and grown at 4 C for 5 weeks. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
Reference
ReferenceSalsman E et al. (2018) Development and validation of molecular markers for grain cadmium in durum wheat Molecular Breeding 38:28.
DNA Homology
Ta.9583.1.S1_x_at1043WHE2AFFY
[ Show all 18 ]
DNA
cccggtgttcttatttttctctgtgaacacaagtggtcaatttgttggtg
ttgccgaatggttggtcctgttgactttgacaagacggtagattattggc
aacaagacaagtggaatggctgcttttcaatcaagtggcacatcgtgaag
gatatccccaacaacattctgaagcatattacgttggacaacaatgacaa
taagcctgtgacaaacagccgtgacacacaagaggttaagcttgagcaag
gtcttcaaatgctcaagattttcaaggaacatgtcagcaagacctcaatt
ttggatgactttgcattttacgagaaccgacagaagttgatgcaagaaaa
gagagcaaagcaacaaccgcttcaggggcagggtgttgatgagaaggaga
agagcgcagttaacgggaattccgctgcacagaagcagacaccgagcaag
gagagcaccacccctgccgccggtgaagagccgaacgcttccaaacccac
cacagctgaaagcggcggcgcgagtgccaactagcgtgatatatttctta
cgctcgttgctgtaacatgcggtagtccattgcgc

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