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GrainGenes Sequence Report: NSFT03P2_Contig15940

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Sequence	BF473824
Contig	Ta.7619.1.S1_at NSFT03P2_Contig15940
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC284744
wEST map position	BF473824
NCBI UniGene	Ta.32042
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001067404.1 Os12g0641500 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	4DS
Clone Library	Wheat vernalized crown cDNA library
Tissue	Crown tissue of seedling
Developmental Stage	Five-week old seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0837_H03_O05ZS Wheat vernalized crown cDNA library Triticum aestivum cDNA clone WHE0837_H03_O05, mRNA sequence.
Other Name	WHE0837_H03_O05ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA016E1X
Clone	WHE0837_H03_O05
Probe	WHE0837_H03_O05
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were germinated and grown at 4 C for 5 weeks. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.7619.1.S1_at 1178 WHE2AFFY Ta.7619.1.S1_at 82 WHE2AFFY Ta.26594.1.A1_at 232 WHE2AFFY Ta.26594.1.A1_at 72 WHE2AFFY
DNA	cttgtccttgatacagccagcttagtgaaatctaccttaaagaatgcagc tgtctgaccgtgacaaacttgaggcagagtttaaacaaaaaataggtata ctaatggctgagattgaacgcactgctccaaacttaaaagcactggacca atatgaagcacttcaaacgaaggaaaaagaggtgagcgagaagtttgaag cagctaggaaagaagagcgagaggtagctgacaagtataactctgtcaag caaagaaggtatgagctgttcatggaagcctttgatcatatatctaaagg catagacaaaatctataagcagttaacaaaaagtcacacgcatccactcg gaggaacagcatatttaaatctagaaaatgaagatgagccatttcttcat ggaatcaagtacacagctatgccacctacgaagcgctttagggatatgga acagttatccggtggggagaagactgttgctgcactggcattgctttttg ccattcacagtttcaggccatcaccattcttcatactggatgaagtcgat gcagctctagataatttaaatgttgccaaagttgctgggtttattcgatc aaagtcatgcgaacgtgctggcga

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