GrainGenes Sequence Report: BF293613

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Sequence

BF293613

Contig

Ta.442.1.S1_at

NSFT03P2_Contig17596

Tracefile

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External Databases

Data at GenBank

Data at EMBL

Data at DDBJ

wEST map position

BF293613

DB Remark

Locus Source: Triticum turgidum

Keyword

EST

Germplasm

Langdon-16

Species

Triticum turgidum

Triticum turgidum ssp. durum

Cultivar

Langdon-16

Chromosome

4BL

4DL

5AL

6BS

Clone Library

Triticum turgidum L. var. durum (durum wheat) whole plant cDNA library

Tissue

All tissues

Developmental Stage

Different growth stages

Data Source

genbank	Release 135, Apr 15 2003
genbank	Updated Nov 2006

Title

WHE2158_H05_P10ZS Triticum turgidum L. var. durum (durum wheat) whole plant cDNA library Triticum turgidum cDNA clone WHE2158_H05_P10, mRNA sequence.

Other Name

WHE2158_H05_P10ZS [ wEST-mySQL (obsolete) ]

Strain

lab_host E. coli SOLR

DNA Library

TT039E1X

Clone

WHE2158_H05_P10

Probe

WHE2158_H05_P10

Remark

DB_xref: taxon:4571

Feature: source: mol_type = 'mRNA';

Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.

Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in a growth chamber at North Dakota State University (Kianian, Otto, Simons). Tissues collected from seven-day etiolated seedling leaf, stem, root and seed; leaf from plant at fourth leaf stage; spike from pre-anthesis through 20 days after anthesis; flag leaf; leaf and stem tissue from tillers. and root. Total RNA and poly(A) RNA were prepared from each tissue and then pooled, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).

DNA Homology

Ta.442.1.S1_at	757	WHE2AFFY
TaAffx.26100.1.S1_x_at	139	WHE2AFFY
Ta.1055.1.S1_x_at	82	WHE2AFFY
Ta.1055.1.S1_at	82	WHE2AFFY
Ta.28032.1.S1_at	74	WHE2AFFY

DNA

ggcaacaacttccccgtcttcttcatccgcgacggcatgaagttcccgga
catggtgcacgcgctcaagcccaaccccaagacccacatccaggagaact
ggcgcatcctcgacttcttctcccaccacccggagtcgctccacatgttc
accttcctcttcgacgacgtgggcgtgcccgccgactaccgccacatgga
cggctccggcgtcaacacctacacgctcgtcaaccgcgccagcaaggcgc
actacgtcaagttccactggaagcccacctgcggcgtcaagtccctcctc
gaggacgaggcggtcaccgtgggcggcaccaaccacagccacgccaccaa
ggacctgaccgactccatcgccgccggcaactacccggagtggaccttct
acatccagaccatcgacccggacca


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