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GrainGenes Sequence Report: BF200640

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Sequence
BF200640
Contig
Ta.13262.1.S1_at
NSFT03P2_Contig15302
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC290531
wEST map position
BF200640
NCBI UniGene
Ta.13262
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_568630.1 ATARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion binding [Arabidopsis thaliana]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
1BL
1DL
6AL
Clone Library
Wheat vernalized crown cDNA library
Tissue
Crown tissue of seedling
Developmental Stage
Five-week old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0825-0828_L16_L16ZS Wheat vernalized crown cDNA library Triticum aestivum cDNA clone WHE0825-0828_L16_L16, mRNA sequence.
Other Name
WHE0825-0828_L16_L16ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA016E1X
Clone
WHE0825-0828_L16_L16
Probe
WHE0825-0828_L16_L16
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were germinated and grown at 4 C for 5 weeks. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.13262.1.S1_at710WHE2AFFY
Ta.13262.1.S1_at359WHE2AFFY
Ta.13262.2.S1_at313WHE2AFFY
Ta.13262.2.S1_at289WHE2AFFY
Ta.13262.3.A1_at246WHE2AFFY
DNA
ggtgtgttatactggcatttggacccaaagaagcctgaaagcgaagaaga
gctagcgaagatccgcaaagacagaggatacaactacatggactatcttg
acatacgccctggaaagttggcaaactttgaggagaagctcaagaacttc
ttcacagagcacatgcatgccgacgaagagatccggtactgcttggaagg
cggcgggtactttgatgtgcgcgacaaggatgacaagtgggttcggatct
ggataaaagaagggggcatgatcgtgctgccggctggaatttatcatcgg
ttcaccctcgacgccgccaaccatgtgaagctcatgaggctcttcctggg
agaaccagtgtggacggcgcacaaccggcctcaggaggaccatccggtgc

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