GrainGenes Sequence Report: Ta.10838.1.S1_x_at
Sequence
BE606965
Contig
Ta.10838.1.S1_at Ta.10838.1.S1_x_at NSFT03P2_Contig9750
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC341402
wEST map position
BE606965
NCBI UniGene
Ta.10838
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001056514.1 Os05g0595300 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
3DS
Clone Library
Wheat 5-15 DAP spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0914_G08_M16ZS Wheat 5-15 DAP spike cDNA library Triticum aestivum cDNA clone WHE0914_G08_M16, mRNA sequence.
Other Name
WHE0914_G08_M16ZS [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA018E1X
Clone
WHE0914_G08_M16
Probe
[BE606965.1]
[ Show all 6 ]
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.10838.1.S1_at 450 WHE2AFFY
[ Show all 14 ]
DNA
gacgacgacgcctccgccgccatgtaccaccacctgggagacatggggca
gccatccctgatatcagaggaagcagaagctcaacaggtacaggaagaag
aagatccagaggaactttggcagaaagatcaagtatgcttgcaggaaggc
tctggcggacagccagccgagggtgcgagggaggttcgccaagatggacg
acggcgacatgctcaagccgaggaagtagacggggccatggaggccgccg
cgaagccgatgaggagggaagacaaaggttgttgccaggagggaattatg
ctgctgctgctgctgctgctgctgggagatgctgccagtggctttgttgg
cgtctagaagcttctaggtgaggcggcaccgccttctagggtcatggctg
ccgtgccgcgctgcgccgcccgtcggaattcatttcagtcgctccatcaa
atccgttccgttcctatgggtgacattttctattttctgcgttcgtttgt
agtagtagtagtga
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: Ta.10838.1.S1_x_at
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||