Query (optional)   in Class  

GrainGenes Sequence Report: BE604619

[Submit comment/correction]

Sequence
BE604619
Contig
NSFT03P2_Contig8269
Tracefile
[ Download ]
[ View ]
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
NCBI UniGene
Ta.44010
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, weakly similar to NP_001061235.1 Os08g0205800 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
TAM W-101
Species
Triticum aestivum
Cultivar
TAM W101
TAM W-101
Clone Library
Wheat drought stressed leaf cDNA library
Tissue
Leaf
Developmental Stage
Full tillering stage
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE1405-1408_D09_D09ZS Wheat drought stressed leaf cDNA library Triticum aestivum cDNA clone WHE1405-1408_D09_D09, mRNA sequence.
Other Name
WHE1405-1408_D09_D09ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA027E1X
Clone
WHE1405-1408_D09_D09
Probe
BE604619
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were given a gradual stress down to 65% and 78% RWC at Texas Tech University (D. Zhang in HT Nguyen lab). Total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close), at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
ctcttttctccatcctcctctaggttcttgatcgcttcagggaagacaca
tcagtaattccatcatgagctaccagcagggcgccaccgccacggcctac
cctccgccgggccagcagcagcagcaggcctacgtagcgccgccgccgcc
ggccggctacccgcagaaggaccagcagtatcctgccgccgccggcgccg
acaccaccacgagccgcggcggccatggacaccaccacggcggcggcttc
tggagaggctgctgcgccgctctgtgctgctgctgcctcctcgacgcctg
cttctgatcaagtcaatttcatccatcgtgctcggttaggctacgtggcc
taacgactgcacctgctgttcatcacggttgatgtggagtccggatgtca
tctagtaagggcatgtttggattgtcgtttccactcaaatacccttgtag
aaaatatacggacctccgt

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.