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GrainGenes Sequence Report: BE586090

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Sequence
BE586090
Contig
Ta.4698.1.S1_at
NSFT03P2_Contig17121
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC322749
wEST map position
BE586090
NCBI UniGene
Ta.59363
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, weakly similar to NP_001042648.1 Os01g0261200 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Chromosome
3AS
3BS
3DS
Clone Library
KSU wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
Est#8pT7_H06_h6_048 KSU wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone Est#8pT7_H06_h6_048, mRNA sequence.
Strain
lab_host E. coli JM109
Clone
Est#8pT7_H06_h6_048
Probe
Est#8pT7_H06_h6_048
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: John Fellers; US Department of Agriculture, Agriculture Research Service, Plant; Science and Entomology Unit; Dept. of Plant Pathology, 4006 Throckmorton Hall, Kansas State; University, Manhattan, KS 66506, USA; Tel: 785-532-2367; Fax: 785-532-6167; Email: jpf@alfalfa.ksu.edu; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: T7.
Note: Vector: pGEM-T easy; Site_1: SacII; Site_2: SpeI; Plants were grown in the greenhouse. Spikes were sprayed with Fusarium graminearum (at what stage). Total RNA, and poly(A) RNA were prepared from infected spikes. cDNA was prepared using the SmartTM PCR cDNA synthesis kit from Clonetech. cDNA was cloned into the pGEM-T easy vector from Promega.
DNA Homology
Ta.4698.1.S1_at1025WHE2AFFY
Ta.4698.1.S1_at153WHE2AFFY
Ta.4698.1.S1_at129WHE2AFFY
DNA
gcggggaatttcagatgaaagagctacagttacctctggaaaataatggg
cctaatctgtatgaacctgctgatactggaattgtagtgcgaacacgtca
tgggggaacatctgcagctagcgttccaccatacaaggctcgacttcagc
aaagtcttggcaggatggttacgagcagctctgaatccatcaaccagact
atcaagttcgttgacaacaacggtcatcttgatctcatgactaatgtgaa
acaccagaagaaacatgtgcgtgatattgcttctgccaggcagtctgatg
cagagaagtgtggaagtcacaacaaccaaggatttctcaggggcgtccaa
agggcatttagaggctgttcagcaacaggactcaatatactcgttgctct
ttgcatggttggagttgctgcagcaatactgcaccatggacgtcaccgtg
gtgggatcagtttgtagtagagggggatcagaagcgtgcctagttttagc
tgtacaaatctgtagcatctacgcactgtaatcttgacagtaggcactgt
gattgaagtggatgagcgatcgagcatgtggccttctggaggtacttgtc
gttacacgtaatgtgtgctctggtgcaggacattgattcccttatatctg
gtttctgcatggtgtttgtacatatgaaagccttgctttttgatcagtct
ggctagtattatggtgatggat

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