GrainGenes Sequence Report: Ta.4293.1.S1_at
Sequence
BE585724
Contig
Ta.4293.1.S1_at NSFT03P2_Contig4954
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC280843
wEST map position
BE585724
NCBI UniGene
Ta.48430
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Clone wdk2c.pk005.h13:fis, full insert mRNA sequence'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Chromosome
5AL 5BL 5DL
Clone Library
KSU wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
Est#1SP6_A09_a9_065 KSU wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone Est#1SP6_A09_a9_065, mRNA sequence.
Strain
lab_host E. coli JM109
Clone
Est#1SP6_A09_a9_065
Probe
Est#1SP6_A09_a9_065
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: John Fellers; US Department of Agriculture, Agriculture Research Service, Plant; Science and Entomology Unit; Dept. of Plant Pathology, 4006 Throckmorton Hall, Kansas State; University, Manhattan, KS 66506, USA; Tel: 785-532-2367; Fax: 785-532-6167; Email: jpf@alfalfa.ksu.edu; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: SP6. Note: Vector: pGEM-T easy; Site_1: SacII; Site_2: SpeI; Plants were grown in the greenhouse. Spikes were sprayed with Fusarium graminearum (at what stage). Total RNA, and poly(A) RNA were prepared from infected spikes. cDNA was prepared using the SmartTM PCR cDNA synthesis kit from Clonetech. cDNA was cloned into the pGEM-T easy vector from Promega.
DNA Homology
Ta.4293.1.S1_at 1229 WHE2AFFY TaAffx.12169.1.A1_at 84 WHE2AFFY TaAffx.12169.1.A1_at 70 WHE2AFFY
DNA
gcgggaatgatgaacatgattgccggtggagccgctgcaagggccttttg
tcacacaccataatgatctaaacatgaagctttatatgcgtattgcacct
gagctttatcttaaggagttggttgttggtggattggaccgtgtctatga
aattgggaagcagttcaggaatgaagggattgatttaacacacaatcctg
aattcacaacagttgagttttatatggcgtacgcagattacaatgacttg
atggagcttactgaagccatgatatctggtatggttaaggagctgactgg
tgggtataagataaaatatcatgccaatggagttgataatccaccgatag
agattgatttcacgcctccctttagaaggatagacatgattgaaggattg
gaggctatggccaaactggagataccaaaagatatatcgagtgatgaaac
aaacaagtatctgatagatgcatgtgccaagtatgatgttaaatgtccac
ctccccagacaacaacacggctgcttgacaagctagtgggccatttcttg
gaggaaacatgtgtgaacccaacatttattatcaaccacccagagataat
gagtccattggcaaagtggcataggtcccgacctgngttgacagaaaggt
ttgagctctttgttacaaacacgaggtgtgcatg
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: Ta.4293.1.S1_at
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||