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GrainGenes Sequence Report: BE585717

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Sequence
BE585717
Contig
Ta.5091.3.S1_x_at
NSFT03P2_Contig16522
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC289181
NCBI UniGene
Ta.5091
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001051540.1 Os03g0794500 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Clone Library
KSU wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
ESTp#8SP6_E04_e4_023 KSU wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone ESTp#8SP6_E04_e4_023, mRNA sequence.
Strain
lab_host E. coli JM109
Clone
ESTp#8SP6_E04_e4_023
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: John Fellers; US Department of Agriculture, Agriculture Research Service, Plant; Science and Entomology Unit; Dept. of Plant Pathology, 4006 Throckmorton Hall, Kansas State; University, Manhattan, KS 66506, USA; Tel: 785-532-2367; Fax: 785-532-6167; Email: jpf@alfalfa.ksu.edu; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: SP6.
Note: Vector: pGEM-T easy; Site_1: SacII; Site_2: SpeI; Plants were grown in the greenhouse. Spikes were sprayed with Fusarium graminearum (at what stage). Total RNA, and poly(A) RNA were prepared from infected spikes. cDNA was prepared using the SmartTM PCR cDNA synthesis kit from Clonetech. cDNA was cloned into the pGEM-T easy vector from Promega.
DNA Homology
Ta.5091.3.S1_x_at979WHE2AFFY
TaAffx.113074.1.S1_at125WHE2AFFY
TaAffx.113074.1.S1_at60WHE2AFFY
Ta.26389.1.A1_at80WHE2AFFY
Ta.1870.1.S1_a_at48WHE2AFFY
DNA
acaatggcatggattctggatgagtactcaaagttccatggttactcacc
tgctgtggtgacaggaaagcctgtggaccttggaggatcactgggaagag
atgcagctactggaaggggagttctgtttgccactgaagccctacttgca
gagcatggcaaaggcattgcaggccagcgttttgtgatccagggatttgg
taatgttggctcctgggctgctcaactgatcactgaagctggtggcaagg
tgatcgccatcagcgatgtcacaggggctgtcaagaactctaatggcatt
gacatagccaagctgatgaagcactcggcggagaaccgtgggatcaaggg
cttcgacggaggagacgccgtcgacccgacctcgctgctcaccgaagagt
gcgacgtccttatcccagctgcgctgggaggagtcataaacaaggacaat
gcggatggcattaaaacaaagtacatcattgaggccgggaaccacccgac
agaccccgaggccgacgagattctggcgaacaagggggtgctgattctgc
cggacatactggccaactcaggcggggtgacggtgagctatttcaagtgg
ttgcagaacattcaagggtttcatgtgggacgatgagaatgggaacccgg
agctaagacgttcattatccgctctttcgggacacaa

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