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GrainGenes Sequence Report: BE585684

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Sequence
BE585684
Contig
Ta.5774.1.S1_at
NSFT03P2_Contig18040
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC279436
wEST map position
BE585684
NCBI UniGene
Ta.50488
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001046044.1 Os02g0173900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Chromosome
6AS
Clone Library
KSU wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
EST2-3_D01_2B11t7_010 KSU wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone EST2-3_D01_2B11t7_010, mRNA sequence.
Strain
lab_host E. coli JM109
Clone
EST2-3_D01_2B11t7_010
Probe
EST2-3_D01_2B11t7_010
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: John Fellers; US Department of Agriculture, Agriculture Research Service, Plant; Science and Entomology Unit; Dept. of Plant Pathology, 4006 Throckmorton Hall, Kansas State; University, Manhattan, KS 66506, USA; Tel: 785-532-2367; Fax: 785-532-6167; Email: jpf@alfalfa.ksu.edu; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: T7.
Note: Vector: pGEM-T easy; Site_1: SacII; Site_2: SpeI; Plants were grown in the greenhouse. Spikes were sprayed with Fusarium graminearum (at what stage). Total RNA, and poly(A) RNA were prepared from infected spikes. cDNA was prepared using the SmartTM PCR cDNA synthesis kit from Clonetech. cDNA was cloned into the pGEM-T easy vector from Promega.
DNA Homology
Ta.5774.1.S1_at1300WHE2AFFY
Ta.20624.1.S1_at220WHE2AFFY
DNA
gcgggagcattggcttgtggatgcactgttgttgtcaagccatcagagtt
cacacctctgacagcattagctgcagcagaccttgctcttcaagctggaa
taccagctggtgcactaaatgttgtgatgggtaatgctcctgagataggt
gatgaactaatgcagagcatgcaggtcagaaagattacgttcacgggttc
aacagctgttggcaaaaaactgatggctggatcagcaaacactgtgaaaa
aggtttctttggagctcggtgggaatgcgccttgcattgttttcgatgat
gcagatattgatgttgccgttaaaggcagtcttgctgccaagtttcggaa
cagtggacagacgtgtgtatgtgcaaacaggatattggtgcaagaaggta
tctatgaaaaattcgcaagtgcatttgtcaaggctgttcagagtttgcaa
gtcggtaatgggctagaagagagtacatcacagggtcctctaatcaatga
agctgctgttcaaaaggtagagaagtttgtaggtgatgctacttcaaagg
gagccaacatcatgctcggtggtaaaaggcacagccttgggatgagcttt
tatgagccaaccgtggtagggaatgtaagcaatgatatgcttcttttcag
tgaagaagtttttggtccagttgcaccacttat

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