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GrainGenes Sequence Report: Ta.29215.1.S1_at

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Sequence
BE518340
Contig
Ta.29215.1.S1_at
TaAffx.56018.1.S1_s_at
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC300945
wEST map position
BE518340
NCBI UniGene
Ta.29215
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001051036.1 Os03g0708400 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
1AL
[ Show all 7 ]
Clone Library
Wheat vernalized crown cDNA library
Tissue
Crown tissue of seedling
Developmental Stage
Five-week old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0809_E10_I19ZS Wheat vernalized crown cDNA library Triticum aestivum cDNA clone WHE0809_E10_I19, mRNA sequence.
Other Name
WHE0809_E10_I19ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA016E1X
Clone
WHE0809_E10_I19
Probe
MAG1468
WHE0809_E10_I19
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were germinated and grown at 4 C for 5 weeks. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.29215.1.S1_at620WHE2AFFY
Ta.29215.1.S1_at92WHE2AFFY
DNA
cacaagtgacaactgacaagtcctcctgacctcctccccctcccaacgcg
ctccgccgggtcgcatcgccgccgccgccgccgtcgaccgaacccagtcc
aacccccgttaaaagcccggccggcgcgcgtgctcgcttctcacttcatt
ttaattctcaaagaaaggaaagggagaaggataaagaaacagaccaacaa
atccactgacggccggcggggaagaaaaggcgagaagatgggaacagtgc
tggactcccacttcctggcgctcaccgccctcgtcaccgtcgggtaccag
ctggtgttcttcatcatcacagccctcctccgcttcgacaaggtcacgga
tttcgcaggcagtacaaattttgtcataatcgccgtcctggtagcagctt
tgaagggaacatggcacttccgtcagatcgtgttgacagtgcttgttata
atctggggacttcgtctggcagtgtttttactaatgaggattttgcaatg
gggag

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