Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: AA042198

[Submit comment/correction]

Sequence	AA042198
Germplasm	CC7277 (oat)
Species	Avena atlantica
Probe	AA042198
Reference	Maughan PJ et al. (2019) Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species BMC Biology 17.
DNA	CAAAGACTTTGGGCTACTCTCTCCTTCTCCTTCCTCTTCCTCTTCCTCTT CCTCTTCCTCTTCTCCTCTCTGTCACACACAGAAACACACAAAAATTACA GGTAAGTGCGTCATCTGTCTCAGTATTAGATGAGCTCGCTCCTGCGGCGA GCACGCCATCTGGCTTGCTTCTGAGCTTGGAAGGGATTGGGAGGGAATAA TTTGTGGATCAAACAAGGTAGGTTGCTGCTCTGTTCTGTTAGTTCTCATA AAGAGGATCATTAAATTTCCCCCCTCTTTTTTTTACCTCATACGTTCAAT TTTTTCCAATCTGCAGTTTGTCCTCTCCGAGACCAGGATGGTCGATGCAG TGGGCGGCGTAGCGAAGATCGTCGGAGTCGCGCTCAAGATCAAGGAGGCG GCCAACACGGCTCGCCAGAATAAGAAAGATTGCCACCACATCAGGAGCCG CGTTGACATTCTCAACAGAACACTCTCGCACCACGAGCATAACGCGGATT TGATGGAGGACTCCGCGGTGATGGCTGCGCTCCAGGCGCTCGACGGGATA CTCGCCGAGGCGCTTGAGGTCATCACCGAGTGCCAGGAGGAGAGGAGCAT CGTCTGCGTTTACTGCACAGCTGGGAAGCTGTCCCGACAGTTAACCAAGG TGGAGCAGCGGATATCCAACCTGAGCTCGGACGCAATGTTGACCATCATG AGCTACATCCTGCTCATGAAGGTTCAAGAAGGTGCAGCTCCACATCCGGC CCCACAGGTCGATCTGGGTTATAAATAATAAATTCAAAGTTCATTACTGC GCTTCTTTTTGTATACTTGAGATAGCTATAAGAGCCTGAGACCATATATG GCACGCGGTTACTTCACTTTTTTTACGAAATTCAACCGATCTATTAATAA TCATGAATAGTAGTACAAAAATTTACTAAAAATAATAAAGAATACAAATA GATCCTTGAACCACCTACCGATAATCCTTTTGCTTCGTGTAATTTAAAAA TATTTAATTTCATTCAGGCGATTTATGTATACTTTTTGTTTTGTTACCAT GCATGACACTTTGGAGTTTTCAGATTTGCGCTCCTGGTCCACACACGCCA TTGCAACCGCCAAGCCCTCCGCAAAAGGTAGCAAGCATGATGTCGTACAT AGTACATGATCGAATGAATAGTATGCTGAATCATATCTACTAGAAAAGTA GATTCCCCTACACTATGATCCACATGTCAAGCTGAGCTCAAGGCCAGCTC ACCCCAATATTTTTCTTTAGATACTTACACATGGGTCCCATCTATCGAGC TTTGAGTCAACCGGCTAATTGTGATGATTACGGTCGTTAGTCATGACCCC CAAATATGGGTTATGTATGAAAATCTTCTAAAGTTGTAGTTATTTCTTAC CATGGCCCCTAAATGTGGGTTTTGCTTTGGTACAATTGCCTCATATACAT AAATGATAGAACATTTGAATCCTTGACTCCCAGATGTCCAAGGAAAACCA AGATGAAACCAAGCACAAAGGTCACATTCAGAAATCACGGGTATGCTATA CTTCCTTAAATATGTACAATCTTGTTACTCTTGTTTCATTTCTATGCCAC TACCATGTGATGGCATATACTCCCTCCATTTCATAATTCTTGTCGTGGTT TTAGTTTAATCCCTCCTTTCCACAATTCTCATCATGGTTTTAATTCATAT TTAAACTAAAACCACAACAATAAATATAGAAGGGAGGAAATATTGTAAAA TTATTCAGGCTATCTACATATTTTAAGTTTGTTGCTAAATTATCAAATAA TACAAGCACACCTACGATTAGGCCGCCATGTATAACTCCCATTTAAGAAT ATTTGTATAGAGCTATATTTAATATGGGGTACTACTATCCCATCTCCCAC AGTGACATGAACTTCTCGAATTCTCAGACGACCAAGTTTGGAATTTGGGA CGATGAGGATCCCACGGACATTATAGATTTTCTCGAAGAGACGAAGCCCC GGCCAATGGCTAGGAAGCACCGGCCTAAGGAAGATAGCTACTGGACAGTC CTCAAGAGGCGGATGTATCATGACTATGGATGGGAGCGGGTAATGTCTTC TATATTTTTCTATCATGCTATCATGTATATAAACTTTTAAACCGGCACAC ACATTGAGCTTTTTCCACACCGAGAACCATACACTGTTGATACACTAGCA ACCATCCGCCTCTTCTTCGGTCATACATACTCCAGGTTTCATAATGTACA TGTAGATACTAGAATTGCACTTCAACAGATGCATAATACTCAAATTTAGA CAAATCGAAATCACTTATTTCCGGAAGGAGTAGGTAGAGTTAAGCAAGAG TGGATTTTGTGCTCAGCGCGTGTTCCTTTTTTTTATCTCAGAAAGTTCAA ATGCAGAGTTAGAAACTTAGAAAAGAAACCATAAAGAAAATCTCGTGTAA ACATATTAGAATGAAAATGTGTGATCAAGTTTATGTGGAAACAAATCATT AATTTGCGCTGTTGAATAAAAAAATATGTTAGTAAGCTAGAACAACATTT CTAGGATTTGAAATTTGGTTTGGTTTGTTATTTTTGCACAACTCTTGAAT TATAGATTTTCACAAAACTTGAAATCTGGAACTTGAGTCATTTAAATGTG AGATATTTTTGGGTATTGGATGAATGTGAATTTGTTTTGGAAACGGGAGT GTGTGTGCTCCCGAGCACACTTCAAAGTTTTCGAAGTCAAAGTTTTAAAT TTTTATTACTCCCCTCCATCCCAAAATACAAGGCCACTTTGTTTTTCATG TCAAACTTTGGCTAAGAATTTGGTCAACCAAATATGAGCTATATGTCATC CAAAAATATATCATCGGATTAACTTTTCGATGATCTATTATTGGATGACA TATAACTCATATTGAGTTGACTAAATTATTAGTCAAAGTTTGTCATGAAA AACAAAGTGGCCTTATATTCCGGGACTAAGGGAGTACTTAAAAATTATAA GATACTAAATCAAATCAAATGTCAGTTCTTTGGATACAACACTTAGATAC AAGTCATATGAGTTATATCCAAACTAGTTGAATGCCCGTGCTTCACTACG GCTTGTTATCTACTGTTGCGCGTGTAAATATAAAATACACATAAATATCT ATGTACATGCAAATAGCCACATTATTTGAAAATTTTAAATTTTACTTTGC ATTATTCAATTTCATGTTTGCATAAAGCAAAAGGGCAAAACATTTCTCTG CAAAATTTATATGGTCATATGCTTATGCATAAAAAAATAAATTCTCTCAC TACACCTCTTTTGATTGTGTAAAAAGTATGTTTCCTTCCAACGCCATTGT GTAGGAACAGTGTCTTCATCACTGATTTTTTTCTCGACAAGTAATTCCGG TACCACCCGTAAATAATATTACCAACCAAAGTTCACCAGTAGTTCAACAA TTTGTTCAAATTTAATAATTTTTAGGAGATTTTTAGACTCATTTGAACAT TCTCGGATATACTACCAGTCACCACCGGTATTTTTTCTAACCGAGAAAAA AACCTTGGTCTCCGATGTTTTTCTCAAAAACCTTTGTGTGCCCTGATGGC TAAGCATCTTCTTTTGGTTACCGCACCAATGCTGTCGCTAATAGATTGTT CTCAAGACTATGATCCGCAAAAGAAAAATATAACAAAAATAAAAACCAAA ATCTAAACTCAATTCATGGAGTGAAATATACTGTGTAAATTGTATGTCTA TACACGCTGAGTTGTAGAACTCATGCTGCCATCAAAGTAAATCATGCACA CTTCTCTCAGTCAACTATGTGTAAGAAAAATATGCGAGGATGGCCTGTTA AAAACAGCGAAGGGGAGCGACTCTCTTTTGGTATCTTTCACTCACTTGTT TTTTCTAATCCTTAGTTTCTCTATCCCAAAATGTCTGCCACAGCACCTCG ATTCCGTTGCTCACGGCTTAGGCCCGCGGTTGACTGCTTCTTCATGTCGT CGCTGCCACCAATTTCTCTGAGCATTCCAGGCATTCCACAACAGCCACGG TCAACCCTCTTAATCCAGCTACTCAAGCAATGTATTGATGCAAGTACAGA GTACCACAAGCTTTTTTTATATGAGTACCACAAGCTTAATGCTCCGGTGA ATGGAGAGCTGATAAAAGGCTTGGTGCCACAAAGTAGTGTACCTGCTAAC TATACTATTCACACAGTTCAAGGTTAGGCATCCAATATTTCATAAAAAAT AACTATAGAGCCTTTAGTTGCTTGACGATATTTATACATGCTCACAAAAT AGTGATTATAAAGATTAATACTGGTGTATCTTGTATTACTTATATCGTGA CGCAGGACTTGCTAAATGAACATGGTTGAAGAATTATGGTTACATTGGTT AGGGCTTAGGTAAATCAGAGAAAAATGTAGCAGCGAGCTGCCAACCGACT CGCGGAAAAAGCCACAATTTTCTCCTCACGTGATTCAAATTATTATTTGT TCTTAAGTATTTTTCTGTTCCATCAGAAACAACAACCAATCGGTGCAGCG TAGGTAGTCAATATCATCGGATCAGTTTCTGCCAATCTACATGTACAGAA TCAGGTTCAAACTCTATAATGCTGCTCCTCCATAGGACACATTCATGTGC CTAAAGCAACTCTATAAGCCTAGTAAGAACACATTCATGTGCCTAAAGCA ACCACAAGTCGTATGAATTGCTCATTATTTAACGCATGCGTTTTCTCCAA CTCGAGCAAATCACCGAAGAGGTGACCTCAATTAAAATATTCATTATTAT TGTGCTTCCTCGTCCATCGTGATCTTCCATCCCAAGTCATGATCTTTGTA TTTAAAACATTACTTTATTTTATAGGACTAAAACAAGACAACAATATTCG AAATGTTGTGGATTCAACTAAAATAACCTCAAACAACAAATAAAGTACAA CGACTAAATACTAAGTTGCTTTGGAGCTTCTTCATATAGGAATCAAGCTT TTTGCCATTGGGGATTGAGATGGGTCAAGAGCTAAACGTATGCCCCTTAC CGTGATTATACACAAACATGGATGATATATACCGTTCAGACCTCTCACAG AAATTTTCAAACAAGAAAACATAATTAATTGAGTGTTGAACTGTGTCAAA AAGCTTATTAAGATACTTCTGGTTTTCCCCATGATATAATGTACCAATCA ATCATGCTTCCCGTCGCTCCCTTGAGTCCGTCCTTTTATGGAACTTAAAT AGTAACTGAAATCTAGTACAATAATCTGGGATACTCGTTACCTTCTGTCA AGCACCTGGAATGTCCTCGATGTTATTTACCATCATCACTTTGTTGTTTG TGCCGAAATCAATGCTGACTTCAATAGCTAACCAGCCAGCCCCTCTCCCT CCCCCTCCTTCCCTTCTCCTTCCTGCTCTTCTACTCCTCTTCTCCGCGGT CGACACAACGTACTCCCCTTCTCTTGTGGTTGTGGATGTTCCGCACATCT AAAATTTGTATGCACATAAGTACTAACCATATGCACTAACACGTGTTGCA CAACAGTTTGAGGAAAACATAATGGTATTTGAGACCTTGATTGTCGGTCA CATCCTTGCCTCGTGTCCCTGCAGATTCTTTGAATTCTGGGAAAGCTTTT TGTGGAGATCCACTATGTCCTGTTCTATGTCAACATATGCAAGAGAAAGT GTCAGATGGAAAGCTCATCATTTACATCCTGATGTGTATATAAAAAAACT AGAATTGAATTTACTATATTAGCTACTGCTCAGTCTGACAAAATAATATA AGAATGTAAAGTCCTAAGGAAATTCAAATTTATGATCCAATTATGGACAC AGTAGAACAGAAAAGCAGAATTTGGACTTCCACCGAGCAAAGAAATCATA TGTCCAAAGTAAAGCTGGTGGTTTCTTCATGTAACTTAGTATAGTAAACA CCTGCAAAAAAAAGTACTATAGTAAACAAAAGCAGCAACATATGTGAAAA GGTAACCAAAAATAGACCTAGAAAATTTAGGTGATTCAAGTATGCCTATC AACATTTGATTTGTTTTTTGACCTCTTAGAGACTCTTAATAAGCTAGTAT TACTCTTACTGGCTTAGTAGTAACTCTTCAGGTTTGCCAAAGGTGTGGAA AGTCCCTTTTTATAGATTATAAAGGAGCCAAGCAAAGTACAATACCAAGA TAGATATCATAAATATATTTTATTTATGGCAGCCTATAAATCTTGTACCC AAACTTCCATGGTTAGATTTTGCTCGCTATGTAATAATATTAGATCTGTC CTAGTTACACACAATGGAACTTACTGGTGCTCTAGCATCCACAAGCTCAC AAGCATCATATATCGATTTTGGATGACGACACTTTTCTGGGTAGTGTGAT TGGCTTATGTCATATATCAGCTAGAAATCTAGAGGGTTTAGCCGATACTT TGCACAAAAGGAACAAGTAGTGACCATTACTCTGTTTCAAATGTATCATA CGACAAGGCCTAGGCACATGTTTCATCCAAATTCTATGTATAAAAATCTA CCCTAGACTACATTGCGATGAACAATTAGTAGTAACAATTAGGTTTGGCC AATCGTATTTATTTAAGAGGGCAAAGCATGCATGTACACGTGTACATCAA TTGCTTACATTACATGATGATAGCCTATTTACAATTTGAAAAAGACATAT GAATTGCACATATTCAATACAGTCAAATCAAATATAAGCAATTTCACGGA TTATGGATATGAGAGGGAAGTGACAAACCTTGTTGAGCTGCATGAGCATT GTAGAGGTGTGAAAGTGGTGGGATACGCTATCTATCGGTGGATGGGCTTC TCCACGAAGAAGCATCTCCAGGAACCATGCACCGAGGACGCCAAGTGTCC ATGGCCTTGGACATATGGGATTAATCAGATCCAAGGATCCACTATCCTCT TCCGTTTTTCTGCAATCTCACCGAAAAAATATATACTCGCAGTTTTTTAG AGAATTTAGTACATGTATACAGCTGGCCTGCTAGGGATATTTGAGAAAAG AAATGTTCTTCACCACAAACACCGTCATCTAAACCCCGAACTTATTAGAA TTGTAGACTACATTCTCTTTTTGGTTTGACACCGCCATACTTGTCTATAC ACAAGTTCCATTGAACTGACAAGACTGAAACATTGCAGCGTGCACTTGTG GCGTGGGTGCTCGCATTTCCAAGCAACACATAGTTGTTGCTGCACTGTGT GCTTGGGCATGATCCTGATGTGTAGTACAAGCTGACACAGAACAAAAGGC AAGGTTATGAATTACAATATATTTCAGCAGTAATGCTGCTTTGCGAACTT AGAAGGTAAGCTGAATTTTACTTGAGATTTCTTGGCACGCAAGTGCACTG TACACATTTGCCGACAGTAAGCGCGTATGTTCCATTTGCCACAAGCAACC CATGGTCTGAAGCCGACTTTGAAAATGAAGATGCACAAGCTGCACAGAGT AGACAATATAACCATCAGCAGAAAATAACTTCGAATGGATACCTATGTGA AAAGAGAAACAAAAGTTCAGCTCGTTATGGAGTTGCAGAAATAGTAATCC ACGAAAGTAAAGCTGACAAAAACGGAGATCCATCTAGGAAAATTGGTACT CTGCGTAATAATTGGCATATGGTATCTTCATTGATACACACTTCTGAATC TCAAAAGTGATAAAAAGGGGAATAGCTGAACAGTTCATCATACTGAATTG GACGAAGAAGTCGCTGCCCCTCCTCTATCTTCATCCTCACTCATTTTCCC TTGACCCATTCCCACCAAATCCTGCCCGCCGGCTGCCTGCTCCGTATCAC GATGGGCCTTCACGCACTCCTACGCCCTGCCCAGCCTCCTCCATCGCGTA GCTGCCAGCTTCGCAGCGCGTCCCTGCTTGTACCTAATCGCCGCTGTCCT CCTCCTCGGCTGCAGCTCCCCCGTGGCACCGGCCATGGCGGGCCTCTTCG TCGGCCACGACGACAACGCGTGTGAGGTGGGTGGCGAGAGCGATCCTAGA GGAAGAGGCGGTTGGGATTTGTCTCCTCCTCCATGGCTCGGTCAAAGCGG TGAGGGCAGAAGGGGATCGCGAGAGGTCCATGGCTTGACAAGGGGAGGAG CTGAATTGGCGGCGAGATTTGTTCCTGCGGGGTGGAAGATAGGACGATGT AGACAGTTTTGGCTATCATAGATGCGGGAGATCTCATCCACCGGTAAGAG GATTGGACGGCTATGATTCTTTCAATGTTTGTTGTCAAAGTGGATGTTTA ATTTCAAAGTGGACGTACCAACACCAACTTCTTTTTAATAGTAAAGAGAT ATATATTTTGTGTAGTCATAGATTAAAAGTAAAATACAATGGGCCAGTTT AAGTAGTCATTGGTACATTAAATTTTGTTAATGGTACAAATACTACTACC TCCGGTCTAAATTAGTCTTTGCAGGTTCAATAAATCTAGACAAATTTTAG ACAATATTTTGTCTAAATCCACTACAATTAATTTGCATCGGAGGTAGTAA CATTAGATGTTATTCCTCCTTATTCAGGCCTTGTTTACTTTTAGTGTAAT TCCACCCCAAAGGGGTTTGCATGGGAGGGTCCACCCCCTCTCACCCAATC CCATCAATTCCCCTCTAATCCCAATCTCTTACAGATACTCAGATTTTTTC AGATGAGAGGGGCATGAAAATAGACATCGTCACTCAAGTAAAAATTGAAA CATTGCACCAAATATATACAAATGTCTATAATACAAACAGTTCGCACGAT TCTAACAGGGATATTGGAGTGAGAGTGCCCTTTGCGGTGGTGGTGGCTCT TCTGACCACGATCAACCGCCCAAACTGGCAGACCAAATTGCTGAAGTTGC GAGAAACATCAATAAGGCGGTGAAGACGCTTCTTCAGAACAGAGACGATT GCGTTGAGATTGCCAAGCGTGTGAACAAAGTCAACACCCTCGTGCGGAAG CTCAGGAATACAGAGATCATGGACGAGCCGGCGATGCGGAGCGCCCTGGA GAAGCTCCTCGTGACCTTCCTGCATGCGGACACGCTGGTGGCTGCCTGTC AAAGAAGGGGCATCATCATCGTGTGCCTCTCCAGCCCGCCTGCTCGACTA TCCAGAGAGTTGCATGAGGTGCTGGATCAGATGGCGTCTGACATCGCTGA AATGACGGCCATCGTTCTCCCCTAAGGTATTTACGACGTACCATTTGCTC ATCTTTGTTACACGGATCATTGATCAATTATCTTTGTAGCAAGTGCTTGT CGCTATGTGATCTGAAAATTGATGTCATTAGCCTCGTAACAAATACATGT GACTGATTTGAAATTGATGCCATTAGATTTGTATTTGAGCATATTTACCT ATGGCTGCAAGCCTGCAATTTGTATCTTTTACATCATATATGGATACATT TTGGGGACGGAAGGAATATAGTTGGAGACTAATATCTTGCTGCTATCCAG CCAACATCCACTGATCGCATGGAGGCGTGGTGGATCAGTGCCATGGAACA ATTCCGTAGCAAGGACACGAGGGGCCTCGATGCTTTGGTCATTATAACTT GCTGGATGTTGTGGAAGCAGGGAGCAGCATAATGCCAGAGTATTTGGGAA TGTTCACTATTGCTAGTGAGTTAGGTAGTCGACTTCTTGAGGAGCTGAAC CAATGTTCCATGGCTGGTCGATAATTTAGGCGGGTTCAGATTTCCATTTT TGCCGGGGAAAAAAAGATCGAGTCGGAAGCTCCATTTTTCTTATCCTCCG CAATGCCCTCGGTTTATTTGTGCACGCTGGTTGCCAAGCGGAG

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.