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GrainGenes Sequence Report: BE499835

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Sequence	BE499835
Contig	Ta.3706.1.S1_at NSFT03P2_Contig17332
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC283592
wEST map position	BE499835
NCBI UniGene	Ta.23445
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001047033.1 Os02g0533900 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	5AS 5BS 5DS
Clone Library	Wheat pre-anthesis spike cDNA library
Tissue	Spike before anthesis
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0979_F10_K19ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE0979_F10_K19, mRNA sequence.
Other Name	WHE0979_F10_K19ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA019E1X
Clone	WHE0979_F10_K19
Probe	MAG697 WHE0979_F10_K19 BE406584 BE499835
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.3706.1.S1_at 900 WHE2AFFY Ta.3706.3.S1_x_at 262 WHE2AFFY Ta.3706.3.S1_at 262 WHE2AFFY
DNA	cgcgaacattgtcctcattcaggagctatttgaggggcactatttctgtc aggctcaaaggatggatttctttgggcgtgccaagccttataaagagaac ccgactataatgagaatgcaaaagcttgcaaaggagttggatgttgtaat acctgtaagtttctttgaagaagcgggcaatgctcattacaattccgtgg ccattattgatgctgatggcaccgatcttggcctataccgcaaatcacac attccagatggaccaggttatcaagagaaattttatttcaacccgggtga cactggattcaaggctttcaaaaccaagtatgcaacaattggtgttggaa tttgttgggaccagtggtttccagagaccgcaagggctatggtgctacag ggggcggagatattgttctatcccactgctattggttctgaaccccagga tatgaacctggattcccgcgaacactggaagcgtg

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