Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: AA000541

[Submit comment/correction]

Sequence	AA000541
Germplasm	CC7277 (oat)
Species	Avena atlantica
Probe	AA000541
Reference	Maughan PJ et al. (2019) Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species BMC Biology 17.
DNA	GAATGCCTTGAAGGTGGGAGGCAGAGGCCGAGGTGTCCCCAGCAACAAAC AAATCTCCCTGCTGCATGTACGCATAGGCCGAGGAGGCGAAGAGCAGAGC AAGCAGACACAACACGCCAACCAGTCTCCTCACTTCCCCAACCATTCCCG CGACCCGTCCGGTGGTGTGGGTTGACTGACTCCCGGGCCCCGCCCCTCCC GTCCCCACACGCCAGCGACCGCGGCCGGGGCTCCCCGAGCGAGAGGAGGC GCCGCCGCGGCAGCCGCAGCTGGTTCCCCTTCCGGCTCCGGCAGTGGAGT GGATTGGTGCGGCCGCGGGGTCGCGACCCGCCCGGTCGGTCTGTCAGACT CGGTCGCGACGCGAGCGCTGGGTTCGGGTTCGGGTCCGGGCCCGGGTCGG GTTGGGCGCGGATGGTCGGTGGCGGCGGCGGGGGTGCTGGCCGGGCGCGC AACCCTAACCTGCTCCTGCTTAGCACAACCCTAGGCCTCCTCGCGCGCGG GGGGTATATTAGATGCCGGGGCCCGGACTCGGCGGCGGTACGGGCGCGGA AGGACTGGGGCTCGATTTCTACCCGGTGATCCAGGCGGCGCTCGTCGGGT TCCTGCTCTTCACTCTAGTCGTCACCGCCGTGCGCCGCGCCGCCTCCCGC TACTTCGTCGTCGACGCCTCGGGGTTCGCAGCAGCCTACGAGGACCACCA CCTTCTCCACGACCACCCCGAGTACGCGATGCCGCCCCAGGAGGGGAGCC AGCAGCAGCAGCCCGTGTCGCCGGGGCAGGCGGCTGGGCCCTGCGCCCAG TGCGGCGTCGCTGGCACCAAGAAGTGCTCCGGGTGCAAGCGTATGCGATA CTGGTGCGTCCCCCGTCCTCCTCTGCTTCGCATCCCCTTCGTCTTCCTTG TTGCTCGGTATAGTCTAGCGATTGCGCGTGATCTTCCATTCTTCCCAAGT TCCTGCGGAATCTTGTCGGTTCTGCTGTGTAATTCGGTGGGTAACGCGGG CAATTCTGCCAAGATCATTCACGCTTCTTGGCCTTAACCCAGGTGTCCAT TACTGTGATTTTCCTCTTGTTTCTTGGATGCCTGGGTAGGATTAGTGATG TTTCTAGTGGTTCGTCAAGGTTTAAAAAGCACTTGAGGGAAACCTTTCTG CTCGTGTGAGGTTATTGAGTGCTGATCCTCTGCAGTTTGGTGCTCTCATT AGGGAGGGGGTGCTTACAAGGGATATATGCGGAGAACAGAAAATTCAGGC TCCTCGTCGTGCTATAGTTGTGTGATTTGTCTGTTGTTCGTCCATAACAG AAAATTCAGATTATTGCTTGTTGTTTGCTGGCCTGGAGAGGAGCTTTAAC GTCTCATCAACTGAGTGGACATGTGTTGTGCTCTCGAGGAGAAATCATGG CTATTCTGTCCTTCTGTCAAGTGCTAGGGCCTTCAAGGTAGGAGAGATAG TTATCAGTTAGCTCGCGCGGACCCATGTGAAAACAGTGGGTGGGAAGTCT TCGATGTTCAGCAAGTTGGCCGTTTAACAGTATCAATTTCATGCCATCCA AATCCAGATGGCATCTGAGGCTCGCTCAGACACATATTTTCTCAACAGTA ATACAACAGAGAGTTTAAAACATTGCTTAACACAAGTGCAGAACAATCAC ATTTTTATATTTTCTTGATTCTCTCGATTTGTATTGAAGGGCAACACTTG AGCCTTTTTCATGTACTTTCCTTTTTTTTTGTATTGAATAGTGTGAATGA GAAATAATTTGTTCTTACCAAGCTTGTTTATGATACTGCTACCTCTTCTT CTAGAAGAAAGAAAAGATGATATTATGCGTTTTGATATGAGTATAATCGG TTGATGTGATGAGTGTTAGCACAAGACGATGGGAACTTATAACTATTAAT GTCAAGAAGTTATTCTCAGTTTTCTTGCAGTTTATGGATTGATCAAGTGT CTGCCTATCTATTAGCATGTAACAGATGCTGCTCTTATGAGCTTCTCTTA TTTAGATGCTGGTAATTTCTGCACATCAAACATTTCCGAACCACAAGTTT GTTTACGAGGTCATATGCCTGGTTTAATTGTAACAACGGTGGAGTTCATG TTGAATATATTTGTGGTCATTTTTTCATGCTTGGTAATTCTCGCTCATAG GGAAGTTATAACTTTTAATCTGTCAATCTATACCCTTGGTGTTGGCTATT ATAATATATAAATTGAATAGACTCATGAACAACAGCTGTCTTACATCTAT GCTCTTATCTAGTTCTGGAGAATGCCAGTCAAAGCATTGGCAATCTGATC ACAGATTCAAGTGCAAACAAATGAAATTGCTGGATACTGTTGACAAGTCA CCCTGTGGAGTCGAGGCCAACAATAAGAAGTCTTCTGCCTTTGGCCGGAT CTCATTAGTGCCTGGGCATCGAAAATTAAACAAGGTGTGCAAATATACTC TTTTACCCAGAATTTTGAATGCAGAGCGATGAAACAAATTTTCACTCATC TTCTGTACACAGGTTATCTTTCCTTATGACGAATTTTTAGAGCTATACAA TTGGAACGATAGGAATTACGATTCTTCATTACCTCGTGGACTTGTGAATT GTGGCAACAGGTATGTTGGAATAGTGCCATCCTTTGCTTTAAACACACTT CCTTATATTCATCTGGTTGTTCCTGTTTCTTTTGTGCAGTTGCTTCGCCA ATGTGGTTTTACAGTGTCTATCACACACGAGGCCACTTGTGGCCTATCTT TTAGGAAAGGACCATATTAGGCAGTGTAAGTGATGGTGTATGATTATTAT GTACTAACATCTGGCTTATGCTTAAGAGTTCTCCACATCTCAACATTTCA GGTTCTATAAGACATGAAAGTTGGTGTTTCTTATGTGAGCTGCAGTCTCA TATTGAAAGAGCGGTTGATAACATGCACCCATTTGCTCCCATGAACATTC TTTCTCATTTACCAAATATTGGTGGCAACCTTGGGATTGGTAGACAGGAA GATGCTCATGAATTCATGAGGTGAATTACTTTCTGTGCTTGCATGTCGGT TTTGCTTACTCTCTCTTGGATCGTCTTGAATTCTGTATGATGCATTTTGT ATTTATAGGTTTGCAATAGATAAGATGCAATCAGCTTGTCTTGATGAATT TGGAGGTGAGAAGGTCGTCGATCTTAGCACCCAGGAGACAACTGTTATTC AGCACATTTTTGGCGGCCGTCTGCAGTCTCAGGTCTCTTGTGTTTCCACA TTTAATTTAATGTAATATTTTAATTTGCAATCAATGAGTAAACCTGTCTG TTTGCTCTGTTTATAATCAGTTCTATATTCTTAAGGGATCTTCTGTCTTT AAATATGCATATGTTACAATTATATCAAATGCATCTTAGGGTGCCTAACA TAAATGACACATGCAGGTTCAGTGCACTGCATGTGGAGTGGTCTCAAATC GGTATGAGAATATGATGGACTTGACAGTTGAAATTCATGGTGATGCTGAA TCCTTGGAAGAGTGCTTAGATCAGTTCACTGCTGTGGAGTGGCTTGATGG GGATAACAAGTACAAATGTGATGGGTAAGTCCCATTTATTGCATCAGTAC ACTTCTAATATTTAGCCACAAATTTACAGTGTCATATTTTCATATATTGA CACTTTGTTATTTAGTTTGGGCATATCAACCTGAAACCAGCTTGCTCTTA TTAACTACCTGTACAATAATGATCTCCCCTTGTTCTTTTGAAGTCTCTTC CAAAATACATAAAGTGACATTACTTTTAACTGGCTGAATACCCATGCGTT GCCACGGAACAAGATACAAATGTTTTGGCGATATTACTCAAACAATTGTT GTATCCGAGTACCGCGTTACACGAAGTTGTTCCCGTTACGACTTTGTCAT CGACCGACTCAACACCTAGATCACCAATGCCTCTTCTAACATGCATTGCT TGAATATGAAATGATACCATTACTTCAGAAACATAATACAACTATGTATT AAATAATTGAGAGTTGCTTGTACTATTATATTTCGGGTATTGCAATGTTT CATTTTTCAAATCAACTTGCTTAATATTTAAGCATATCTTTTCAGCATAG TTAAATGCATACATCTGAATGTTCTTTTAAAGAATCATCAGTGCAAACAT TTGAGCTCCTCTTGCCCCACGCTCTATTCTTGAAGAAGCCGGTCCAAATT TGTTAACCATGTATTCTGGACAAAACCAAAGTCCCTGGGGCATGTACGCT TCGTTCAGACCAATATATCTTGAGTGGTACTCCCATGGGCAGGCATCACA TAGCACACCAAAGTCCCGTCTTCCACATACTTGGCAATCATCACTGTTGC CATCATGAGAAGCATTCGTTAAAATAGCTCCTAGGTTTGTAATATTCTCA CACACAGAAGCTTTTGAGTGACAAAATGAAAGAGTCCGCCTCATTTTCCA TTTCCTCACTGTAACCTTCCTGAGAAGCTGGCCAAGTCAACACATCTAGC CACCACCATTAAGCATACGTAGTTTCTAACACATTGAAAGACACCACTGA GCGGAGCAGCGTGAGAAGCAGAAAAATTAGTGACAGAAGAATCCCCTCCC CCATGTGAAGGCTTCCTTGCAGCACCATGTCCATATATGCCTCTTGCCGT ATGGTCGGCATTATGGCCATCTTCAGCTGTCTCGAGCATGGGAGCAGACA ATAGTCGCTAGAAATATTCAGAGTACATTACCTGCGACCTGATGATCTGT CCATGCGCTGATGTGCGTCTGGACCGCCGCGATGGGCGTGGGCTTGGTTC CTCCAGTGACCGCTGCAGAAATCTGACGGAGATCGGGGACACCATCGATT GGTAGATCACCAAAATCCGGATGTGAGGGCCTGGCCTCCTCGCTCCCCTT TACTCTTGAGCCCACTCTTCTCGTTGCGGCAGTGTGCTGGGTTGCGTGCC CTCTCTTCTTGTCGGGGGTTCCAGGGGGACGGGGTAACCGGAGATGCTGG GATGGGTCACCAATCACCGGGGGCGGCGCGTGGCCTTGCGTGAGGAAGAT GGCATGGAACTGCAAGGGGATTTTTTGAGCTGGGATTGCGGGTTGATTTG CAGACTGCGTCCGCGCCCCTCCCCATTTGGCTCTCCTCCGCCACGGTCAC GCCTGAACCGTTGCCCTCCCCCTTCCCGGCTGAGCCACCATCTCCCCCAC CACCGGCCTCCGCCCTTGCGCAGACCTAAGCGGCTCCGTAGTAAGCCGAC CATCTCCTCGCTGCTGCCGATCCGCGGAGATTGGCCGCCGCTGCTGCCGT CCCCGGAGGTCCGGCCACAACCCAGGCGATGCCTCTCCTCTGCGCACGTC GCAACCAAGGGGATCGACTGGATAGGGTTGGGGTGGTAAGCTAGGCAGTG GAGAAGGAACCATCTAGTCTTTCACTTTGCGGTGGCAGTACGAGTAATAT ATCCGAACAAGGGGCAAAATTGACCAAAAGAAGGCAGACGGAAAGCGACG AACAAACGGCTAGACAGTTAATAGTATAGATAGATAATTCTAAATAAGCA GGATATGTTTAAGACTTAGCCTGATTCTCATCTCATGTGAATCTGTGTGA GTTGGTGATTATATTCTTAGTATATACTTCTAAATTTTGAATAAGAGTTG ATTTAAAGCTGAATATGATAACTATCTGGAATCATTATCGATGGACAGTC AAAATCTGAATCAGATGACATTTTTCTAACCTATTGGTTGCTATTGTGCA GATGCAGCGACTATGTCAAAGCACGGAAGCATCTTACAGTTCATCAAGCT CCAAATATACTTACTATTACTCTCAAAAGATTCCAGGTTAGGACATGAGC TTGTTGAACTATATCAGTGCTCTTGTATCATGAAAGCCGCTCTTAACATA CTTTCTTGTGCTTGTCAGAGTGGTAGATTTGGAAAACTGAACAAGAAAGT TACATTTCCAATGAAGTTGGATCTAACACCATACATGAGTATCACTGATG GAACTGACCAGTATAATCTATATGCTGTCGTGGTTCATCTGGATATGCTG AACGCTTCCTTTTTTGGGCATTATATATGCTATATAAAAAATCGTCGAGG AAATTGGCTTAAACTTGATGACTGCAAGGTACATGTGCTTCTGTATTATG ACCATGCAAGTATTTGGTGTCCCAATGGCAGATGATAAATTTCTTACTGC CATTTGTAGGTTCTGTTTGTCGATGAGAAGGAAGTACATGCTCAAGGTGC TTATATGCTTCTATATAGCAGGTAATTGTTATGCGTGTTCTCAATTATGG CATCAATATCTGTTGGTAGGGGAGAATCCACATGCTTACCAACATCCAAG TCTATTTTTCTATTGCTACTTTATAGCTGGAGTGTCTACTCTGAGAAATA TGTGACCACTTCCTTTTTTTATCTCCAACAAGATATAACTAATAGCAGAT GGTCGAATTCATATTGACTTATATGCAAAAGAAAGACTTTTCATATATAC ATGCCTTCATATTGCTCTGTTGTCTCGTATGGTTTCACCATTTTAGGATA ATAGCTGCAGATGGAACTTCCCTCGCCATCTAACATTCTCTCTTACTTTA TTCGTCTCATCTAAATTACTCCTGTTTATTCCACTTTTCTCATAAATTTA ACTAGTATTACTTGTCTGTGACTGGTAGAAATACGCTAAAACGTTCTGAA CTTGTCTTAGTTTCTTACTTTAGTTGTGCTAAATTGTTTCTCCATTTAAT CCACTTCTTGCTCACAAATCTAACTAGTATAACTTGTTTGAGAACTATGC TAAAATGAACTGGACATGTGGTCTGACAAGCCTTCCTTTACCCTTTATGG CTCTTCAGGGGAACAGCTCGTCCTGGACCACTTCTTGCAGTCAAAGAACC AATAAAACAGGAGAAACAATGTGAAGTGCCTCCTTCAAATGGAGAAAATC ATTTGATACCAGAGGATGTGCCAGTAAAATGTGAATCATTTTTCAAGCCT TCAGAAGATATACTAGCGGATTCTGAATCCAGCAATGTATCTGTGCACGA AATGGATGCCCTCGACCAGGTGTCAGACTTGGATTTGCATATAGACATTG AGAGAGATAAATTAATTGTGAATGAAAATCTACATCAGCCAGTTTCATCG TCATTGCATGTTCTTGAAGAAGATACCAGCGACCCATGTTCTCTGTTAGA AGGCAGTACTACCATGAGATCTGACCAATTGGGCAATTCTGCATGTGAAT CATCTCCAGTTAATTCCTCTGCAGAGGAATGTGAGGTACCTGCCCCATCT ATTGATTCAGTTGACTACATGGATATTGATACTGAAGCTGGAAGAGAAGT TGATAGCCAGAATGTGCAACAACAAGCTGTCTCAGGTGATTCAGTTCGAG TGATGGGCGTTAAAACATCAGCTCCAATATCTGAGAGTTGTATTATGGCA GGGAAACCAAAACCACTATTTTCTCTTGGTTTCCTTGACAAACCCTCAAG AAAGAAGTCTCACTTGGAAGAGAGTCAAAATCGGCCTGACATGGATGTTT CCTCCCAAAATGTAAATGGTCATTGGAATGAACATCTCAGCAGGTCAGAG CAAGGAGTTATTGCCAACTCCTCAGGTGGCCAGACATCCTATGCGAATGG AAGTCTCCATAGTAATGGAGATATATTTGCGAATTCTAGCAACGGAGTTC TTGCCAATGGTGATACACAATTTGCCAATCACTGCTTGGATGCATCAAAG AGAGGTGTACCTTCGTTTCGTGGTTTTAATCCAAGGCCTCATACGTCACC ATCAAGCAGCAACATAAATCGGAACAATACAAGTAATGGCAAAGGGGACA TGTCATTCTTATCACGGGGTTTCCTTGAAAGGCCTCGTTCTAGAGAGAAA GCAGTCAAAGGCAATGATGGGTTGCCATTTAGTAATAGAAATGGCAAACC ATCACCATCCTCTATGAATGGCAGCAGCATATCAAATACTAATTCTTCAT CTCAAAGCAGCCAAGGTGGCATGGGGATGTCTCCTGGATTCCTTACAAAG CGTTGCAGGGAGTCAGCAGGCATGGGTGCTAGTGCAAGCTGTATGGGTAT CCCGCAAGCTAGTAACACTTCCAAGGAGCAAGAACATGTTGGTTCTGCAG CATTGCCAGACCAGATACAGGAAAGGTGGAGCTCCGATTGCACAACTAGT GGCATTGCGCTGCAACATAGAGCAGCTTTTGCTGATAATGTGAATGGCCA CCGTGATGAAAACGGGCATTCAGTTCTGGGCACCAAAGATGCCATCTATG GTGAAGAAAATGGTAGTAATGGAACTCTTCATGTGGACGGTAGCAGTTGC CAAATGGATGACTATGTGAATGGTCACTCTGATGAAAACGGGCATGCAGT TCTGGGCACCAAAAATGTCTTGTTTGTAGAGGAAAATGGAAGCAATGGAG CTCTTGATGCAAGCAGTTGCCAAATAGATGGTGTTCCTGTCACGTTGGTC TCCGAGAATGGCATGGGATCAGAAGACGGTGACCACGTCGTCAAGTCCAC ACGTTCCCCACCTGTACATGACGGTATTCGACGAAGATTAACCAGCTCAA AATATTTTGATGCCCAATGA

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.