Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: NSFT03P2_Contig17004

[Submit comment/correction]

Sequence	BE499546
Contig	Ta.5516.1.S1_at Ta.5516.3.S1_a_at NSFT03P2_Contig17004
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC294216
wEST map position	BE499546
NCBI UniGene	Ta.5516
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001048806.1 Os03g0123600 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	4DL
Clone Library	Wheat pre-anthesis spike cDNA library
Tissue	Spike before anthesis
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0961_C01_F01ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE0961_C01_F01, mRNA sequence.
Other Name	WHE0961_C01_F01ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA019E1X
Clone	WHE0961_C01_F01
Probe	WHE0961_C01_F01
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.5516.1.S1_at 1001 WHE2AFFY Ta.5516.1.S1_at 640 WHE2AFFY Ta.5516.2.S1_x_at 385 WHE2AFFY Ta.5516.2.S1_x_at 246 WHE2AFFY
DNA	tgaaatggacaagagggatgggaagttcgggccacaacccatgcaagtgc ctccaatgcagcagatgtcacgcatcgatcagcctgtccctgcacccgct ggctatgcaccacaaccagcatacggccagccttatggtgcctacccacc tcctccagctcagggttacccaccgccgccagctcaaggctacccaccgg caggttacccgccagcaggttacccccaggcccagggcagttcataccct ccacctggttcgtatcccccacctggttcctacccccctccgcagggcta ctacggaaagtaaagtacgtgcagcgatcggagtggtattcgttggtgag gcaacacaagtatggtgaacatgtaaacagtaggactattgtagtgatat ataggtgatgttaaggtactcgtcgatattggtctgggtgctgaattggg aaccgcatttgggtctcctctgggtggtgaactgtatggatttcttctgg gtggtcattggtcaactatgaactgcatcgcatttgtagttcctctgggt gttaaaactgtgaactcttcgcattccgagtatgttgttctctg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.