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GrainGenes Sequence Report: BE499478

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Sequence
BE499478
Contig
Ta.14116.1.S1_at
NSFT03P2_Contig12183
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC354809
wEST map position
BE499478
NCBI UniGene
Ta.55749
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001060452.1 Os07g0645100 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
2AS
2BS
2DS
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0974_A08_B16ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE0974_A08_B16, mRNA sequence.
Other Name
WHE0974_A08_B16ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE0974_A08_B16
Probe
WHE0974_A08_B16
BE499478
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.14116.1.S1_at805WHE2AFFY
DNA
caagtatccaactgcaaccacaggcgaggttccgcaatctctcaagaagg
agctttctggtgtgtgcagggcttgcttttcacaagatgctgttaacaaa
cacgttgattttgttaaggagtacaagcaagattttgagcgtgaccttga
cccagatagtgctactacatttccatcaacccttgctgaacttactgaga
gattgaagcactggaagaatattctgcagagtaatgttgaggacagattt
cctgctgtattaaagctagaggaagaaagtaaagtacttagggattttca
tgttgttgatgtagaacttccggggcagtattttacagatcaggaggttg
cacctgaccacactgtcaagttggacagagttggacctgatataccaatt
gtgcggaggcatggtagtagctttcggcgcctgacacttattggttctga
tggttcacagcgccattttattgttcagacatcattgacgccgaatgctc
ggagtgatgaaagaatgctgcagc

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