Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: AA005308

[Submit comment/correction]

Sequence	AA005308
Germplasm	CC7277 (oat)
Species	Avena atlantica
Probe	AA005308
Reference	Maughan PJ et al. (2019) Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species BMC Biology 17.
DNA	ATGCGACTCGATGCTATATCATCACTAGTACGTACGTACGTAGCAGGTAC ATACTATTCAGAGGTTCAATATATAATGGTTCCTCGCTGCAAAGTCAGTG TGAAATGTTTACTTCCACTCCGTATATATTGGAGTTGTAACTTCAATGTC CTTGCAAGTGTTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT CTATCTATCTATAAAATTAAAAAACAAACAATGGCTAGGATTGATATCTG TTTTGAGCTAGAGCTATTAAACGGTGGACATTAAGCTAAGAGCGAGCCCA CACGGTGTGAGGCCACAGATAGACGCACGACAAAGAAGAGTTACATGGCG GAACGATGTAGAATACACGGCAGCGAGAAATGACACAGCAAAACCCAGAA AAAACATACGACAAAGAAAACCCTCACGACAAAGGACAAAAACGGTCCAC GGCAAAGAAATAGCACGGCACACCATCTCGTGGGGCCCACCATTTCGGCA CAGCTGACGGGCCATGGTGACAACAAGGCTTTGCCGTGTGCCTTATCGTT AGGCACGACAAAGTTTTGAATTGCAAAATTTTTTTTGATGCGAAATACTC CTGCCATTTTTTTATAACGCCCAAAAATGGTTAGCCCGAATTATTCAACA AGAAGAAATTCGTAAAAATTGGCAAATAATTTTTGCACAATCTTTGTCAT GTGCCTTGCACGGAAGAGATGGCTTTGCCATGCACCATGCACAAAAGCAC ACACCAAAGTCGTGTTTTTTTTTCCATTTTGTCCCTCTTTTTGCCACCAT TTTCTTTCGACACATATTTTATCTCAAATATCTCCCATACCCATGTCTTC TACATGAAAAGACGATATCCTAACCTCTAGATGAAAGGAACCACACTAGA ACACTGAACATTTGTTTTTATCTACGAAGAGTTGAGTTGCTACCCGCGAC TTCTGGCATGACATACCAGCACTTTCAACCAACTGAGCTATTTCCCCCTT TCGTGCTTCTAGGGACACTTTCACACATATCCAAGGTCCACATAGAGGAT TTCTTGGGATTCCGGTGCTCCGGCGGTCATTCGCCGACGAAAACACCCGT CTGTGGGCCCGAAAAACTAGGTTTAGGTTTGTTTAGGACATAGATACATG GAAAACCAGATTTAGGTTTCTTTAGGACATAGATCACATCGGGGAGCAAT GTATTGCACCATTACACTTTCAACCAAACTTTCACACACATCCTAGGTCC ACATACAAAATTTGGTGGGATTCCAGCGCTCCGGGGGTCCTTTTCCAACA AAAACACCTATCTGTGGGCCCGGGAGATCTACCTCCCTAGTTTTCTCCGC ACGAGGTTCCACCAATGTACTTTATGATAGGTTTAGGCTTGTTTAGGCCA TAGGTACATGGAAAACTTGGTTTGGGAACCTATAACACATTCTAGTCCCC CGGTATACCCGCAGCAGGACATTTCCACCTACACGTCCAGAAATCTACTA AGTGTTACCGCCCGAATGTGAGGAAGGTCACATCGGAGAGCTATCTCTTG CATCATTTGGTGAATTACACATTGCACCACGCTTTCACATATACCCTAGG TCCACATGCAAGATTTGGTGGGATTCCGGTGCTTCGGCAGTCACTCTGTA GCGAAACACCTGTCTGTGGGCCCGGGAGGCCTACCCCCTAGATTTATCCA CACGAGATTTCATCAATGTACTTTTCATATTTTTAGGTTTGTTTAGGATA TACGTACATGGAAAACCAGGTTTGGGACCCTGTGGCACATTCTAGCCCCG GTATACCCACAGCGGGACATTTCCACCTACACGTCTAGAAATCTCCTAAG TGTTATTGCCCGAATGTGAGGGGGGTCACACCGGGGAGCTATGTATTGCA CCATTTGGTGAATTACATATTCCACCACCCTTTCAAACATATCCTAGGTC CAAGATAAACGTCAACCTGAAGACTGGGGTCGACCATTTCTGCCTTCACT CTGACGGGGTGGCAGTGATCGAAGCGGTGAAGAAGAACTTAGGGCTTGAC GAGGTCGACGTGGAGCCTTCGAGGATGATGCTGCACCGGTGGGGAAACAC GTCGGACAGCAGCGCGTGGTACATGCTCTCATACATGGAGGCGCAGGGAA GGCTAAGGAGAGGCACTAGTAGGAAAATGCCCTTTTATACCGGTTCCAGA GGGGCTTTGGTACCGGTTTGGCAACCGGTATCAATAAGTCGGGACTAAAT CATCCCCCCTTTAGTACCGGTTCCTTACGAACCGGTATTAAAAGTGCCTC CACGTGGGCACGCATGAGCCAGCGGGGCTGGAGTCTTTGGTACCGGTTTG TAACACGAACCGGTACCAAACGTGGGGACGTGGCAGAGATTTGGCAGAGA ATTTAGTGTTTAGGGTTTAGGAGGTGTTTAGGGTATCAGATCGTTTCATC GTACGAGGATCACGTCGATGTGCCAGAAACGCGTTTGGGTTTAGGTAGTA CATGAAGATCAAGGTGATGCATATCAACTTGGTGCATATATATAAAATAT GTAATTGCATAAGATTGCAAATTAAGTAGTACATGCATAGTGGTACTCTT CGGAGCATACTATATATTACATGTAGCATAGTGGTACTCTCCGAGCTAAA CTATATATTACATGTAGTACATGCATGAAGATCGATCTTCATGCATAGTG GTACTCTCCGAAATTAGCTATGACGTCCCGAAGGAAAAATCCCGCCAATT CCTCGCCAATTGCTTTAAAGCGGTGCTCGATTGAGAGCGTGTCCCGCTTT CTTGCCACCTATAAAAGAATGAGATACAAATAAATACATGAGCTATGTGT ATATATATATCAAATCATAATCAAACAATTATGACTAAAACTCAGCACAA CTGATGGTAACAAAATAAATTTGTGAATATTGTTTACGTACCTTTTTATT TCTTTTATTATTCATTCTCTCGCTGACAATCTTGTGAATGTACTCGCAAA CTTAGTAACCACATAGATTAGTCCCTAATGGTTGTTTCGCGCAGTTCTAT GCAAAAATATAATTCAATCAAACAATAATCAAGTATGATAAAGGTGTGTG GACCTCGGTAGTACTACTTACTTTGTTCAAACACCATATCGGGAGTTGTG ACTAGCAATAATGTAGTATTTCAATAAGGGCGTCTTTGGATCACAGGATT CCAAAACACAGGAATAGGAAGAACATAGGAATTTGACAGGGTTGTAGGTA CAAAAGATTGCAAAACAGAGGAAAACTGCAGGATTAACCGTTTAGATAAA ATACAGGAAAAGTGCCTAGTGTAACAAAGAGGTTAGAGTGGATGTTAACA TTTCTATGGGATAGAGTGTAGAAATGCAATCCATAAGAATTTTAGAGGTG TGATTCTTTTGATCCAAAGGACTTTCTTAGGAAAAAAGGTCCTATGGGTT GAATTCCTCTAAAATTCTTTTGATAATCTTTCAATCCAAAGAGACGAACA TAAATCAGTGTCCAGATGTATCATTGTTTGCTAATTTGACGAAAGAGAAA TGGTGAGACTAGGGAACTCACCCAGAATCCTAGTCTCCCAGCCCGCCACC TTAATGGACATGTTCCTCATTGGCACATGTAGCTCGCAATCTGTCTTCTC CGTGACATAATCCACGGGGTAGCTTGCTCCACATCCTACAAGATGCGAGG AACCCACGCTGCTTCTTGGCTGAGATGGGGCAACATCGGCTTGAGTATCT TGTAGAAACAGTTGCTGATCAGGTGCCCTCTGTTGACTAGTTGAGTCTAT TTGATTTTTCTCAAGCAGCTGCACCTTACGTTCCAATTCCGATAACCGGT CTAAGTCCTGCTTCTTCTTTCTTGCACGACTTCTATAACTGTCAGCGCAC TCCGGCCACGCTTCCTTCATGGTGACACCTGGGAGGGCTCGTATTCGTCC AAAGTGTTCAGGATTCCCCAGAGCGAGTGTCAACTCGTCATTCTCTCTAT CGGGAATGTAATCTCCCTTTTTAACTTTTTCTATTGCATCTACAAGCAGC GTCGTGACTTTTGCAATTTTTTCCTTCTATTTTCCCTTTGCAACGATCCG CCCTGTCTTTGGGTCCAACCCTGCCCCATGTGCGAACAACCAGAACTTGG ACCGGTTGGGCCAGTCCCTTGTCTGTGGAACGATCTTTGCTTTCATCAGT TTATCTTCAAATGCTATCCACTTTGGAATGGCAGTTTTGTAGCCACCTGA CCCTAGGTTATGGAAATATTTCCTCTTTGCAGCATTTTTCGTACCCGTGA CTGATCGGGACACGGCAGTAGACGATTGCTTATACGCCTTAAATGCGGGC CAGTGCGCTTCTATCTTCACTAGACTTTCAGTGAATATTGGATCTGCATC TTCATATTTGGCCCATAATTTTTTCTTCCAGGTCTGAAATTGTGTGGCCA TCTTCTTAAGAGTCCATTTCTTTACTTTCGTCTTCTGGCCTTCCTTCAAG TTTTCCGGTAGGTTGAAGTGTGTCAGTAGACTGTCCCAAAGAAAAAAATT TAGAGTATCGTTGACATAACTAGCTTCATCCCCCGCGTTCTTCGGCTTAT GCCACTCTACAATGCTGATCGGTACATGGTCCCTAACAATAACTCCAGCT TGATTTATAAATTTACGGCAGTACTCTTTGGGTTCCACCGGTTCACCACT ATCCTTAAATGCGGTGAGGGCTAACCTACCCTCGCCCGATAGACGATGCG TCGGGCTTCGTTTCCCTTTATCACATTTTCTCGATGATCCAGAAGGCTAA AATAAAAATTATTCGTTAATAAGTGCAATACAAAAAAATCAATGCATCTA CTGATGAACATAACCTTAATATAAATACACCTCGCCGGAGTTTGTTAAGG ACACTTCGTTGTCTCTACTTTCTTCAGACTCAAGTCCCTCACCGACATCG TTCAGAAATTGTGAGCCAAAATCATCGTCATCTCCATTGGGTTCTGGTCC ACGGGCACTCTCATATATCATTTTTTGCACAATGTCTTCTTACTCCTCAT CTCGGATGAAGGGGTCGTGCTCCATAGCTCAATGTCACTACAAAATCTTG ATAGACAGAAGACAGAGCACAGTTTAACATCTGCTTGCTGGTAACATCCC GTGAGTAGCGATATGAAAAAAAAGCACTGCTGATAATTAAGTGAGGTAAG CTCAACGATAGCATGACAGCAACAAATGCATGCCATTTGTCGGTAGATGT TCTAGCCTTCATAAACATGCATGCATGCCTTGAAGGAACGAGGAAACTTC AGTGCTCAAGAATGGCACACGCATGAACCTAGTAAAACAATCGCCATCTC TTTCTAGAGAAGAACCTCCTTAATTATTCTTGAGGTCTATATTATATAGA ATTGATTGGTAGACACAAAGTTGACCCTCAAAATATTTATGTCTAAAAAA CATCTTCACAAATGAAACAATAAGAATTGTTATGCATGATGTCGGTTAAG CTAGCCCCAATAGGGAGCAGATGGCAATTATTAATAGGATTTGACGCGAT AAACATCTGCTACATCGACTTACATGTTCCATTGAGCAATCATTCTACTA CATCGTGTGTGCATGCTGATTGATAGATAGAAGCCATGCTAATAGTCAAC TTTAATTTTGTGATGGTATAGGTATATCACGGTGATTGCATATCTCTCAT AATATGTTCTGATGAGCTTATTTGTTGAATTTGCAACCAATTTGGTTCTT AATGCTAGGCACAACATTTATGATTTTTTATCAGAAGCAAGGAGTAATTA TGATGTATGTCTTCTTACCAATATAACATATAGGCTACACAACCCTTTCC AAATCACTAACATTATAAAATGCGTACTCAGATCATTTTAAGTGGAACAT ATAAGAGATAGCTTGTGTTAGATTCAAACACGTGTAACATGAGCCATGCA TAGACATGCCAGAGTTTTATGAGGCCGAACTCTGAATTGATCAGACTTAG TGCAAAACAGCAGCAAAATGAAAATTCATTCAAAAGTTAACACAACTATC GGAAAGGAAGACAAGAGCTATGTCCTCACTTTAGTCCCACCAGTATCCTG GTTATTAGTTTCAGCGTATATCTACTATAGCTAGCTGTTAATATATAAGA AACTAGAATTTGAAGCTTATAGTGTAAAGAAGTATTGCTTAACTATAGAT AGTTGATCGGATGATGATCCAAACTCCACAAATTTCAAAATTATCTTATG ACATAATGAATAGACGATCGGTTCTTTAACACTTGCAACGAGCAGCCACG ACCACGGCCAATGCCCACGGACGACGATGGCACGCTGGCGCCATGGACGA CGGCGGCGACGAAGGCGATGACGAGCACGACGAGCGTGAGGCACGCAGCG GCGCTGGCGAGGGGCCGCGCCACCTTCCGCCTCCCCATTGCGCTGGTTAG GGGCCGCGCCACCTGCCGCCTCCCCATTAATGCGCCATGCCGGCGGTCAA CCTCATCCGCTGAAACAACGAGCCGGAAGGAGGGGGACAAGGGGAGGACT CAACTGCTACTTGCCGGCGAGCGGGCGGAGCGGCGGTGGCTTGGCGCCGG CCGGGGGAGTCGCTGCGCTGGGGGAGCGGCGACGGTGAGGGAGCACGGAC GCGAGCGGGCGGAGCGGCCGGCCGAGGACGGCGACAGCTTGGCCGGGGAG CTGCGTCAGGGAAGGAGCACGGCCGGGGAGCTGTGCCGGGGGAGCGGCGA CGGCGGCGGCGGCTTGGCGACGCCAGACTGCGGGGGTGGAGGGATTTGGA TAAGGCGTCGTCGTTGTATATCGATTGGAGCACAGTCGAAGATGGTTGCT TGGCCAACAAGTATAGCTGTTCTTCATCAGTGCCATTAATGAGACGTGTT TGCAACCAACCGCTGAAAGTCTTCATGTGTTCTCCATCAATCCAATCTTC ACATTGCTCCGGGTATTCCGAGCGTAAAATATTCTTGTGTTCCACTATAT ACGGAGCCACCAAGCTAGAATATGTAAAACTGTGTAGTGTGCTTGAGTGA AAGAATGTCCGTCCATACACATTGTTGCTTTCTTTCCTAGTGTGCTTTTT CCACGCAGTCTCCCCTCATAGCGCGATTCAGGAACACCGATCGACTTAAG GTCAGGAATAAAGTCAACACAAAACTCAATGACCTCCTCTGTTCCATAGC CCTTGGAGATGCTTCCTTCTGGCCTAGCACGGTTATAAACGTATTTCTTT AAGACTCCCATGAATCTCTCAAAGGGGAACATGTTGTGTAGAAATACAGG ACCGAGAACGCGAATCTCTTCGACCAGGTGAACGAGGATATGCGTCATAA TATTGAAGAAGGATGGTGGGAACACCAACTCGAAGCTAACTAGACATTGC ACCACATCCTTCTGTAAATTTTGTAGAGTTAGTGGATTGATCACCTTCTG AGAAATTGCATTGAGGAACGCACATAGCTTCACAATGGGTACTCGAACAT TTTCTGGCAGAAGGCCCCTCAATGCAACCGGAAGTAATTGTGTCATAATC ACGTGGAAGTCATGAGACTTTAGGTTTTGAAACTTTTTCTCTGACATGTT TATTATTCCCTTTATATTTGACGAGAAGCCAGCCGAGACCTTGATGCTAC TCAGGACTTCAAAAAAGATCTCCTTCTCTTCTTTGGTAAGAGCGTAGCTG GCAGTACCTTGATACTTCTCTGGATTCAGGTTGTTTCCTTTGTGGATACA TTGCTGGTCCTGCCGTGCATCCGGTGTATCTTTTGTTTTCCCATACACGT CCAAGAAGTTTAGCAGGTTCACGCAAAGATTTTTCGTCACGTGCATCACG TCAATTGCAGAGTGAACCTCTAGGATTTTCCAATAGGGTAGCTTCCAAAA TATAGACATCTTCTTCCACATGGGTACGTGTCCATCAACATCATTCGGAA CAGATTTTCCGCCAGGACCCTTTCCAAAGATCACTTTTAAATCCTTGACC ATATCATATATAACATCCCCAGTAGGGCGGGTAGGCTTTGTTCGGTTATC TGCCTCACCTCTGAAATGCTTTCCTCTCTTTCTTATGTGATGTTGTTTTG GAGAAATCGGCGATGCCCCAGATACACATTCTTGTTTCCCAAATATATAC TGCCAGTCTCACCTAAACAGTGTGTGCATGCATTGTATCCCTTATTTGAC TGTCCTGAAATGTTAATAAGAGCAGGCCAATCATTGATGGTTACAAACAA CAACGCTCGTAGGTTAAATTCCTTTTGTGCGTGCTCATCCCACAGAGGTA CACCTTCTTCACGCCACAACTGTAAAAGTTCTTCAATCAATGGCCTCAGA TACACATCAATGTCATTGCCGGGTTGCCTCGGGCCTTGGATGAGCACTGA CATCATAATAAACTTCCGCTTCATGCACAACCAAGGAGGAAGATTATAGA TACATAGAGTCACTGGCCAGGTGCTATGACTGGAGCTCTGCTCCCCGAAA GGATTAAAGCCATCTGTACTTAGACCAAATCTTAAGTTCCTTGCGTCCTC TTTGTGCCATCGGAACAACTTGGCATGCTCTTTGTTTTGGAACAAACGTT TCAACCGTGGTATTATAGGAGCATACCACATCACCTTGGCAGGAACCCTC TTCCTGGGGCACGACTCGTCCTCAACATCACCAGGGTCATCTCGCCTGAT CTTATACCGCAATGCACCACATACCGGCATGCATTCAAATTCTCGTACTC CTCACCACGGTAGAGGATGCAGTCATTGATGCATGCATGTATCTTCTGCA CCTCTAGTCCTAGAGGGCAGACAACCTTCTTTGCTTCGTATGTACTAGAG GGCAATACGTTCTTCCCTGGAAGCATCTTCTTTATTATTTTCAGCAACTT TTCAAATCCCTTGTCAGAAGTACCATTCTCTGCCTTCCATTGCAGCAATT CCAGTGTGGTACCTAGCTTTTTCTGGCCATCTTCGCAATTTGGGTACAAT AGTTTTTTGTGATCCTCTAACATTTTCTCCAACTTCAACCTCTCCTTTTC ACTTCCGCAGTTTATCTTTGCATCAAGAATGGCCTGACCCAAATCGTCAT CGAGCTCATCAAAAATGGGCTCATAAAAAATGGGCTCATAAAAAATGGGC TCTTCTTCAGATTCGTCTCCCCCCATTCTACTATCACCGTCTTCAGTGAA CATAGGATAGTTGTCATTATCCTCTTCTTCTTCGTTGTCTTCCATTATAA CCCCTCTTTCTTCATGCTTGGTCCAACAATTATAGCCGGGCATGAAACCG TTCTCAAGCAGGTAGACGTGAAGGTTTTTTGAAGTAGAGTAATCCTTCGT ATTCTTACAGGAACTACATGGACAACAAATGAAACCATTTGACCGCCTGT TTGCCTCAGCCTCGTTGAGAAAATAATGCATGCCAGTAATAAACTCGGGA TGGCATCGGTCACCGTACATCCATTGTCGATTCATCTGCATTATATAAGT ATATAAAAAATCATTAATTACACAACATCATGAATACATGAGTGACCAAA TTAATTAATATTCAAGTTTATCATCACATAAAACTAAGTGTTTTTATAAA AAAAAGAGACTCACCGAGGTTGTGCCGGCTAGGGGACGACGCTGGCGATC GACGGCGATGAGGACGGGGACGATACTAAAACCAAAAAATCATACTTCAA TTTAAGCTCAAATTGCATATAAAAAGAATGAAATCCCTAACTTAGGCATT TCATCGAACACCTTGGTAGCACTAGAGAAATGATACGAGTTAGACTAGCA ATGAAATAAGCTAAATTAGGATGATATTGCTAACCCTTGGATAGACGGCC GATGCCGTCAATCTTGACAAAATGGTGGAGAAAAATGGAGATTTGTTGGA GTGTGAGAGGAGGGAAATATTTGGAAATATGAGAGGAGAAGCAAAAATGG AGCTGGCTCGGATGGCTCGCGTGAAGAAATAGATGTGGAGACCCTTTAGT ACCGGTTCTTTATATGAACCTATACTAAAGGTGCAACGCTGGACCCACCT CTGCCTCAAATTTGACGCGAAACCCTTTCGTACCGGTTCGTAACACGAAC CGGTATATACATTCTAAACGAACCGGTACTAAGATATGCCGGTGACCTGA GCAGTTAAACCGGTACTAATGCAACGAAACCAGTACTAAAGGTTAAATCC TTTGACTAGTTTTCTACTAGTGAGGTGACAGGGTGCTCATGGTGACATTC GGATCGGTGTTCAAGTGCAACAGCTGCATGTGGGATGTGATGAGCGATAT AGCGAACAAGGGTGTGTGGGAGGATTGCATCGATGAGTACCCGCTCGAGA GCACAATGAATGCATCCCTGGACAAGAACGGTTGGATCTACGATACCGAG GACGACTCCACATTGTTTTAACTTGAGCACATGCAAGGACATCACATATA CACCCTCCGTTCAGAAATATAAGACGTTTTACTTTTGTAAATCAGATATA TCTAGATATCTTTTAGTGTATAGATTCATAGAGGTTTAGAGTGAATCTAT ACACTAAAAGAAGTTTAGATATATTTATTTTATAAAGCTAAGATGTCTTA TATTTCTGAACGGAGGGAGTAGTAAACTTCTTTAACGAGTCAAAATTCAT CGGAAATATTAATATTTTCACAAATGCTATAAAAATAATAAATTATATAA GCACGATTGAAATACGCTAAATATATATAATTATATATCACATGCATAGA ATCAGGGACGGAGCCAGGATTTCGACATGGGGGGTGGGGGTTGGGGGGGA GGGGGGGGAGGGGGCGAAGATATGATTGTCGCCCTTGAGGTATTGTATAT GACGATATCAAGTGTAAAACAAAATGTGATATACCTTATATTTTTTAGCT TACATTAATGTAGATAGTCTTAACTTTGCATGGATGAGAAAGATAAATAT GTTTTGGCAACAAAATGGGCTGTTTTTTTTTCAAGTATATTATTCTACTA TCAACAACGATTTGCTCTAAATTTTGCACTGGACTATATTAAAAATTGAC GCAATTGGCATGAAAAAGTAATATGTTGCTCTCTGTTTATTAGGTAGCGA CTTGTCGTTTAACTAG

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.