Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: AA001979

[Submit comment/correction]

Sequence	AA001979
Germplasm	CC7277 (oat)
Species	Avena atlantica
Probe	AA001979
Reference	Maughan PJ et al. (2019) Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species BMC Biology 17.
DNA	CGTGGAGATGCTCTTAATTTGAACGCTTGGTGAAACAGTGAGAGGGGATC CCCTCCCAATCTCCTGACTGACCCGCGGAATAAACAGTCGTCTGCTGACT GTGTAGCTCCCGCGGCCGAGTTCAGCGAGAAGAAGAATCCACTCCAGGAC GGACAGGACCAAGAACAAAAGAACACAACCCCAAATCTAGCGCCACGGCA GACAGCGCGGCACAAGTACACCGTTCGCCCCCGCACGTCGCCCACTCTCC CGGCACCCACCCCTCGTCTCTTCTCTTCTCGTCTCCCCGGCGCGCGCTTC CCCTTCTTTGCCCTCCATCCCTTCCTCTGGTCAAACGGAGAGCTCTGTAC TCCAATCCCCCTCCCTCTCCTCCCTTCTGGGCGCCCCTGCACTCCGCTTC CATGTCCACCGCCGCCACCGCCGACGAATCCCGTAAGACCCTCTCGAGCT TCGGACTATGTTCCGCCCCCACGCCGCTGATGGTTATTTACTCCTTCGAT CATTTCTCTCTTTTTCTTCCAGAAGCGGAGCGGCGGCGATCGGAGGCGGT CGCGTGGCTGCGCGCGCTGCTCCGGGAGTCGGCGCTTCCTCTCCCGCCGC CGCGCGCCTCGGACGAGGACGTCAGGGCCGCGCTCGCCGACGGCGCGCTG CTCTGCGCCGCGCTCGACAAGCTCGCGTGCCCCGCTCTCCCCGCCCACCA GGTAGGCCACCCTTCATACACATGTCCTGCGTCACGCCGCTCGCGCTTCT CCTCCCGGTACGGTCTGCCTGGTCGCTGATCGCCCCGCTGACACTGCAGC AGGGCGGAGCGGCGGCGGAGCGCGATGTCGGGCGGTTCCTCGCTGCCGCG GAGCGGATGGGCCTTCCCAGCTTCGCGCCCTCGGGCCTCGAGACGGTATG TGTTTCTTTCTTCCTCGTAGAGTCAGCTGTCGTGTGACTGCGATCAGTGT TCATATTTGGATTACCCGCTGACCCGTCGCCCACAGACAAGGACTACTCC GTCCGATGTGATTGCTGTGAGGTAGAGATTCACGCTCAACAAGTTAGGAT TTCGTTTTCGCCCTGCGTGGTGTTGCCGGTTGTCGTTGGGCGGTTTCTTG TTGTGTGGGCAACTGACAGATTCATCTCTGTCCTTTTCGAAGTTAACTGG TAGTGGGTGCTGAATGTGGTTTAACGACAGCCTCGAACTATCGAACACCT CTCTGACAAAAATACTTTCAGCTATCACTCAAAAGATGACTATCTGAGCT TCAAATTCCGTTTGATTGTGAAATGATGGTAAATTTTTTTTGGGGGGGGG GGGGGGGGGGGGGGGGGGACGATGGAGTAAACTACAACAGTAAGTTCTTT TTTTTTAGGGTAACTACAGCAGTAAGTCCTGGATACCTAGAAAACGTACT GATTGCGTGAGTTATTATGTACTAATGGAAAACTTAATATGGGGATTTCT TGTTTATGATTGAACAGATCACAATCTGCCCGAATCATTGGGCTGTTTAA TGGTGAAATTAATAAAATATTCGAGTGCCCCAGTGTTTAATGTGTTGCAG GATCATGCAAATGTTCTGACAATAATTGTTGTTTGTTGTGCAATTGTGCC AAGGAACATGTTTGTTCCAGATATTTCTGCAATACAAAGCTTTATCTTCT GGGTCTCATCAGTTTTTCTTATCGAGATTATTGGCATTAATTTAGGGCCC AATGTCAGCTGTGGTTGCCTGTGTCCTTGCACTAAGGGATCAGTTTGTCC CCCATGCTGGAGAAGGCTGGAATTCTAGCCAACCACAAAATGGCAGGAAG CACGGCATGGAATATCCCAAAAGGGAGAATGGCCAGGTCACACTAAATTC TGAAGTCAGAGAAGATAGCAAACAAACGGACACGATGCTACAAAAGGTCT CCAAAAGTCAGACTATATCAGGTGAGATAATATTTACGTGTTCAAAGCTT TGTGAAGGGGATTAGCTAACTTTTGGAAGGGGATTAACTGTTCCATTATC CCCGATCTCCTGAGGATAAAAAATATAGAAGAATTCGTAATTTTAACTGT CAAGGTGTGAATTGAACATACGTAGATTTACACATTGTTGATCCTTACAG TACAGCTATTAAGATATGAAACTGGTTCAGTAATCAGTTAAACATCTTTT TTTTTCTTATCGTAGAACCATTGTCTCCTACAGTACGACCTGCACTATCT TCTATATCACGACATGCCGGACGCAATTTTCATGAAGTCTTCCAACTTAA GCAAGGAGGTTATTCTGATCTACCAAGTTGTAAAATTTCAGAGATGATGA AATCCACCAGCATGGATGTAAGTGTCAGGTGGTAAAATTGACTTATTAGA ACTATTTTGCATGCAATTGTATTTAATTCTTTGTGTTATGAAATTAATAT TGCAGAATGCCCCTACTCAGTCACTTTTGAGTGTTGTGAATGGCATCCTT GATGAGATCATTGAGAGGAAGAATGGAGAAATTCCCTATGTAGGCTATTC AAAAGCAGTGCAGTTAGTTTATTCCTTTCGTCCATCGAAACTCTGGTACT TTTAGTTTTGAACTCATTTCATCCTCTGAAATATGAAGGCCACGTTCTTT GTGCAGCATCTCGCTTGCTTGTTGAGAAGGATCGTGCTGGAGATTGAACG ACGTATTTCTACGCAAGCAGAGCATATAAGAAATGTGAGTACTTATTCAC ACTTATTTCTCAGACTGCTCTTGTTGTAATTATTACTTGTATGCAGCAAA ACAACCTTATGAAAGCACGTGAAGAGAAATATAAATCAAGGATAAGAGTG CTAGAAGCACTAGCAAGTGGGAACAGTGGGCAAATACATGTAAGCTCAAG TGCAACAAATGATAAAGCACATGTAAATGTTTGTGACAGTGATTTCGATA ACAATGTAAATGGCTGATCTCCGTCCTTATATTGTTTTCTTAATTTTTTC TAGGTTGCTGCAGACCCTGTGCAACAGATAAAGGTTTGTTTCTCATCTAG CATCAGTTACTTCTTCATACCTGTCAAACCTAGTTGGATTTGGGAGGAAA AAAAGAGAGTTGAAGGAGGGAAAGAAGGGAGTAGTGACGTGGCGCCTGGC ATGTGGAAAAGAGAGAAGGAAGGAGGAATTGACATAGTACTTGAAATGTG AGGCCATATGGGTGAACCGGGGAGAATTTCTTTGAAACGGAGAAACTACA AATAGAAGTATTGTGACCCATTGATGTATAGTTCAATTTTTTGACATATT TTGTCGACACTGCAACTATAGTAGTAGTACCTGGTCCAAAGTGCAATTTA CTCATAAGATAATGATGCGTATAATCCATTTTATTTTATAGAAAAATCAT CTTTCTGCAGATGGAGAAAGAAAAACTTCAAGAGAAAAGGCGTTTAATTG AGGAAGATCTGACAAAGTTGATGAAGGACAAGGAAAATGTAACTAGATTG ACAAAGGATAAGGAAGACATGGCTAGATTGTTGAATGACAAGGAAGACAT AATTCGATTGATGAAAGAGAAGGAAGAAATGGTTAGGTTGATAAAGGAGA AGGAAAATATGGGTAGCTTGAATGTAGGCAAGGATGAAGACAGAAATCAA TCGGCAAGTCAGCCTATAGCTAAGCCAGTTATGTATAGGGATGAACTCAT TAGTTTGATGAAAGATAAAGAGAACAGTAAAAATATAATTATGAGATTAA AGTTGGAACTAGAAGCTACCAAGTCATCATACGAAGAGAGCCACAGCCTG TTAGAGTCTAAGAAGGAAGATGTACTTAAGCTTCAAAAGGATAAGGAGAA CAGTGACAGTGTAATATCACAACTACGGCAAGAACTTGCCATAGCAAGAA GATCACATGAGACATATATTCAAGAATTGAAGACAACAGCTTTGCAGGAA AATAGGGAGCTCGAACATAGGATGAAGGGGGTAGAGCTAAAGCTAGAAAA TTCTACTAAGAGAGTAAGATATCTTGAAGACTTGTTGGAATCAAGAAACC AAACTTGGGAGCATAAGGAAACCATGCTGAACCAATTTGTAGGTGTACAA ATACAGAATATTCAGGTATTGATTGGTTATAAATTTGTCTTTTCCTCTTT ATTTCTAATAAGAGTTGATGAAGTTATCAATTTAAGTTGAAACTTCTCCC TTATCAGGATTTGAGGTTATCTTCTGTTTCCATTAGGCATGAAATCCTAA ACTGCCAGAAAATATGGTCTGAAGAACTTAATGGCCTTGGTATGACAAAC ACAATGAGTAATTAATGGACTTATTTTAGTTATTACTTTATAACTTGCAT ATTGATGCAATTCCGCAGGACAAAGCCTTAAGGTATTGACGAGTGCTGCA GAAAAATATCATGCTACTCTTGAAGAAAACAGAAAATTGTTCAATGAGGT TCAGGAGCTCAAAGGTGGCTATGCAAGAAACATCAATTTGTTTTTACATG TTGAACTTATTATTGTATGAGATTTCTCAGAGTTTTTATTTTAATGATCA GGAAATATCAGAGTCTATTGCCGGATAAGACCTTTTCTTCCTAACGAGGA TCATAAGTCTAGTACAACTGAATTTATTGGTGATAACGGTGAACTCGTTT TAGCGAACCCTAAAAAAATTGGAAAAGAGGGGAGCAAGTTGTTCAAATTT AACAAAGTACTTGGTCCCATGGCTTCTCAAGGTACAGTTGAAAATGTGTC ATATGCATCTTCAAGGATTATCTCTTCAGTGGCAGTATAAGATGTATGTT GATTTGTTTATTTATGTTTTTTTAGATGAGGTATTCAAGGACATTCAACC ACTAATTAGATCTGTCCTTGATGGCTATAATGTTTGCATTTTCGCATATG GTCAAACAGGATCAGGGAAAACCTACACAATGGTATGAATATCTCAATAT AAGAATCTTCTGATTTGGTTCTTTGAGAATTATTACCACTATTTATTGTC AGTTATGATGTTACAGCCTGTCTTTATTGTGCCTTTTTTATTTAATATCT CAGACTGGACCTGAAAGTGCAACCGAGGAGGAATTGGGTGTCAATTTCAG GGCTCTGAATGACCTGTTTCTTATATCACGCAGTCGTGGAGATACAGTCA TGTACGATGTTAGTGTTCAAATGATTGAGATATACAACGAACAAATCCGT GATCTCTTAGGCATCGATGGCTCCGAGAAGAAATATCCTTTTGTCCATAT GCTTACATTGATAGTTGTTAATATTCACCTGTTATGCATATTGATCTGTT TTCATGTGATCGGTATGCATACACAAAAATGTGTTTATTTGGTTAAGAAC AATTGTCTGTATGTCTAGATTAATGCAACTGAAGTACTGAACCTAGTCCC AACTATAAATTAGGCTAATTGGTTGATTCACTTGAAATTAGCATGTGTAG AAACCTCGAACTTGGTTGGACATCCTTTTACCGACCTTAAAAAATGTTAC TCCCTCTGATCCATAATAAGTGTCGCTGATTTAGTACTTATCATGGATCG GAGGGAGTGCTTATCTGTCCATCTTGTAATGAAACATCCTCTTAAACCCC TGGAAGATTACAAATTGAACTGATGCAAAGAATATACTCTTGTTTCCTTT AACTTGCACACACTAGGGATTTTGAATGCCAGCCATCCCAATGGGCTTGC TGTTCCTGATGCAACAATACATCCTGTCAACTCAACTTCCGATGTTATTG AGTTAATGAGAACAGGACTTGGGAACAGAGCTGTGGGTGCGACAGCACTG AACGAACGAAGCAGCAGATCTCACAGGTTAATCTTACTTTTCCATAATTC TATTATAGGTTTTCTTGTGATTCTATTAAAAAAGGAGGATCATTTTGAGT ATTTTTCAGTGTTGTTACCGTACACATTCAAGGTGTTGATTTGAAAACTG GAGCTACTTTACGCGGGGCGCTCCATCTTGTTGATCTTGCTGGAAGTGAA AGGGTGGACCGTTCTGCTGTCACAGGCGATAGACTCAAAGAAGCACAACA CATCAATAAATCTTTGTCTGCTCTCGGAGATGTTATATTTTCTTTATCAC AGAAGACTTCTCATGTACCATACCGAAACAGCAAACTTACACAAGTTCTG CAAAGTTCTTTGGGTGCTTACCATTGCTCATTAGCTATATACATTGTTTG ACATGTTTTATAATTTTTAACTTGAAAATATTCATCTGCAGGAGGCCATG CAAAGACCCTGATGTTTGTGCAGATCAATCCAGATGTCTCATCTTATGCA GAGAGTTTAAGTACTTTGAGGTTTGCTGAAAGAGTTTCTGGAGTGGAACT AGGTGCTGCAAAGGTGAATAAAGAGGGCAAAGATATCAGAGAATTTAAGG AAGAGGTGAATAATTTCCGTCTTCCTTTTGCTAACAACTTTATTGTTGAT ACAATGGCAAGAGAAATGTATAACCAACTTCTCTTGATCACATATGTTTT TATATCCTTCATGTGGTAGCATACATCTATGTAACTGCAAAACATAATAG ATGGTATGGGTGATGGAACTTACCTCTGGCAATCATTACCAATTTATCAC AAGATACTTCATATATCATTTGATTACTCTAATATTCTTTTTACCCTGTA GCTCTCACTGCTCAAAGAAAAAATTGCAAAGAAGGATGAGGAAATCAACC AGCTCCAGACTCACACTCCAAGGGCTATGGCAGGCAAACGCGTTGATTCC TTACTGAAACATTCGTCCTCCTCCCCAGGCATATCATCTCTGGGAAGCAA AACCCAACATCGAAGAACGGCATCTGGTGGGAAGGCACTGAGCTTTGTCA GTAGGGGCTCCGATGCTGACAACTTCTCTGAGATTAGTGACAGGCATTCT GAAGCTAGTTCTATACAGTCTGTTGATGATATCCAGCAGCAGAGAGAGAT TATGGTACTTTCCAAGCTCTCTGAAGATGAGACAGGTCCAAACTCAGCTG ATCCTGAGATTGACTGTTTTGGTTACGCTGATTCAGAGGGCAGGTTAAGC GATATATCAGATAGTGGTCTATCCATGGGAACAGAAACCGATGGTTCAAT AAGTAGTATGGTAGAGTACGCTCTTTTCCCGGAGCAGGAAAAAATAGCTA GCACACTGAAAGAACAAAAAAAGGCACTTAACACGCCAACAGATCGATTG TAAGTACTTCCAGTTGTATTGATAATATCATGAACATCTCGTTTTGTTGC ACAGTAATTTTTCCTTAAGTACCAACTTTTCCATTTCTAGGAGGGGAGAA ATTCCCTTTAGTACTATAATTCTTCTACATTTAAAATGCACTACTAATTA TGATACTCCCTCTGGTCCATATTAATGGCCTCAACTTTGTCTAGATATGA ATGCATCTAGTCTAAATTCTTAACTAGATACATACGAATCTAGATAAAAT TGAGACCATTAATATGAACCGGAGGGAGTAAGTAGAAGTGATCCATGTGA GTGGAGTAGGTGAGCAGCAGGCGCTATGATGCCAAAATTTATATGGATAT ATCTATATGTTTCGTAGACATTTTTTATGTGTTCGAGAAATGAAAACATG TCCTTAGCCTTTTGTCTTGCTTATTTTTCACCTGTTAGCACTCATTCAGC CATTCTTCCTCATACAGACGTAAGGTGACCACTCGAGTACAGAAGGCAAC AACACCGAGAACAGCACCATCTTCTAGTTTGTGGCCCAAATCAAGTGATT CTCCTCCTAGATCTCCAAGTAAGCCCACTCATCAATTGTCGATGTCTTTG GAATTGTGTGTCACCCACAACAGACATGGTTACTGTTTTGGGTGCAATTA AATCAGTTGTTCTTTAGGATCTACAGATCTTAGTAATTAAATGAATAACA TAAATATTATTGCAATAAATCTTGAAACACAGTTTTAAGGTCAGACCTCT CATGCTAGGCCTCCTGATGTATAAGGCGTTTGAGGCTGAGAGAGGGCTGT TCCTGCACTTCTCCAAAACAAAATAATTCACTCTTACGGAAATTGATTTT GAGACCCTAGAGCTATTCAAATGCTGAAAGTATCAATATTAGATACTTCG AATTTTCAAGACCATGCTCCATAAAGAGTATTGTGTCATCGGCATATTTT AAGATAGAGAGACCACCATCCACCAGGTGTGGCACCACTCCCACAAGTTG ACTGTTGTTTTTCGCGCATTCAATCAAGATGGCCAATATATCCGCCAGTG TTAAATAACATGAGTGATAGAGGGTCGCCTTGATGAAGTCTTCTTTTGTT TGGAAGTAATGTCTAACGTCATTATTGACTTCAATGGACACTCTCTTTCA ACACAAATTATGAACCCATGCGTGGCACTTTGAGAAACCTTTCATTCGCA AGCCAAGGCCATGGAATCCCATGACTTCCTAAGAAAATGAATGGTGAGAT TTCTAAAATAGACTTGGAAAACGAGTGCAGATTTAACGCTTTGGCTTGCA CCAGTTCTTGATCGGTTACTACCCTGGTAACCAGTACTACGGTCTAATTT AGTAGTTATGTACTACCTCCATTCCAAAAAACAAAGCGTATAATTTTTTT CTAAAGTCAAATGGTTTAAAGTTTGACCAAACTTATAGAATAAACTTTCA ATATTTACAAGAAAAAACAGATATAATATGAAAGTATATTGCAAGATTTA TCTAATGATATAGATTTTGTATTATAGATGTTGACATTTTTTCTATAAAT TTGGTCAGACTTTATGTTGTTTGACTTTTGGAAAAAATTATATGCCTTCC TTTTTGGAGTGGAGGTAGTAGTACACTAGTATATTTCAGAATGATTTACT GGGCACCGAAAACAAGTGCAGATTTAACGCATGAACAAATCAAATTAGTA TTCACGAGACAACATGCTACAACAATTTCCAAATATGTAGAGAGCATGTC GTGAGTGTTGGTCCATTTCAAGTTATTGTAGGCCACGAACTATAGCACAT GCAGTTATTATATCTCAAGAACCGTGGTAGACCTAAGCTCTGTTGTTTTT CTCGGAGGTTATCCTTAAGAGTCTGGGTTCTGCTGGACAGTTAGGGAAAC ATTCAAGTGAGTGCTACAAAACATATGCATCTTAACTTCTGAGATCCAGC CTGAGTAAATATCAGTTTTTCTGTTAGTTAAAGGTCTTCTCCCGCACCTT CTGTCTATTTCTCCATATTCTACTAGTATTCAATCTCCTTGATCCGTGCT GTCTCGTTACTCTTTTTTGAAGCATTTATCCATTCGTGAACTAGGATTCA TATCAGAACATTTCAGGTATAAATTAAATTGATTGAACTTAAAATGTGTA TTCATGCAATACAACACACAAACAGAAACCTCACCAAAGAAAGGTTTAGG CGAATTGGCATCAGGGAAGCTTTCAAATATACATATTCATATATATTATT CCAAGTGTTCACAAACTATTTTTTTACAGTGTCAGCAACCACCCGAAGAA GCACAGTCACACGAGCAACATCCTCACCAAGAACCTCAAATACTCCGAAG CGGTGGAATTAGCTCAAATTTGATGCATTTTCCAGTATTCTTGTTCATTT GTGTACAGAAAATTCAGAAAGTAGTTTCAATCTGATGGCGCTCTCTTTTT TTGTCAATTGATTAACTTCTACATCAGTTTTTTTTTTGCTCTCGTCTCTG TAGAAGATGTAAATGATAGTGTACATATGATACTACTACGACAAAACACT GTTTGGGTGTTAAATAGAAGAAAAAAGAACTTTCAGTGTAGTTCGTCACC ATTGTTGCTTTTGAT

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.