Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

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GrainGenes Sequence Report: AA001978

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Sequence	AA001978
Germplasm	CC7277 (oat)
Species	Avena atlantica
Probe	AA001978
Reference	Maughan PJ et al. (2019) Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species BMC Biology 17.
DNA	CGCGGCCTCTCGCGCGCTGCATATAAGCCGCGAACCACCACGACTGCCCC TCAGCTAGCCCACTCGCTCCTTTCCAGCTCCCGCTCTCCTACCTCGCTTC ATCATGGCGCTCGCCGCACGCCACCGACCGCCGCCCCCGCACTGACGTCC AGGCCATTCTTCCTTTTCGAGCTTAGCTCCGACGTGCCTGCATCGTCTGC GTGCACACGCACCTAGCAGTAGCAGCCAGCGGAGCACGTACGTAGAACAG AGACACACCGGCTACTAGCACAGGGCGCGCGCGATGGAGAAGGTGTGGGA CTCGGGGCGGCGGATGAGCCGGAGCATCGGGCGGGGCATGGGCATGGAGA CGTGGGGCGTGGACGAGGCCTTCCTGCAGGGCGGCGGCGCCGGCGGGAGC AGGCGGGGCAGCAGGGGCCGCGCGCACGACGAAGACGAAGAGGCGCTGCG CTGGGCCGCCATCGAGCGCCTGCCCACCTACAGCCGCATGAGGACGTCCA TCCTCTCCGCCGAGGCCGCCGCTGCCGCAGCCGCAGCCGGAGCAGACGCC GGCAAGCAGCAGCAGCAGTACAAGGAGGTGGACGTGCGGAAGCTGGCCGT GGGCGAGCGGCAGGAGTTCATCGAGCGCGTCTTCCGCGTCGCCGAGGAGG ACAACCAGCGCTTCCTCCAAAAGCTACGCGACCGCATCGACAGGTATACG CACGCTCTCGCTACTTTCTTTATAGCTTAGCCGGCCGTGCATGCATATGC ATGCTCGATTTATATATAAAATCTGCTTTCGATTAATTAAAAAAGTAAAA CAGTTGATGAAGAATGCAATTTTCGTGGTTAATTTGGCCGTACAGAACTG CGTACCTGCAGTTGCACGTATGCCATTGCATGGTACCGTTGTTCTATAAC CTTAATTAATTATTAGCTCTTGCTTAAACACCACATGAACAGAGACGTGT TCTCTATCGTGGCCGCTAGCTTAGCACACCTGTTATCTTCTTTCACAAGT TAAAACACTTCCAAAGGTTACCTACTTAACTTCCAACTGTGTAGCAATTG GGTAGCAAAACACTCAAGAAAAGAGAAACATTTATAAAATCTGTCATGCT TCTTTTTCAGAAATCCCAAAAACGAATATAATCCTACATCCAGACTTTTT GGGCTTGCTTTATAGGGCAAAAGGATAAAAGAGTTCAGTTTTCACATGTG CCTTTTGGACGATTGAAAAGTAAATCTGGGGTCTTGATTGACGTGGTTGA AGTTTGCACGCACAAAGAAAGCGATTGATGGCATGTTGCACTAGATCGGC GGACGCCCATTCATTTCTTTCCCTTTCTCTGCTGCGGCCGGTGTGTTTTC ATGAACAAAATTGATGTGCTAGCTCCACCTGTCGCATTATGACTCAAGTT GAACTAATGGAAACAAAAGACATTGTTGGAACCAACTGGTACCAAGGATT GATTAATCACGTCAGCCGGCATGTGCATGACATCAGCACACCAACTGTTT TGTTTTGTTTTTTTGCTGAGTAATCTATGGAGCCTATTTCTACCCTCCAC ATAGGAGGAGAGCAGTTTTGTTATATAACTTATTTAATCTGACTTGTGGA TTAGGATCAACCTTAGCAGTTAGTAGTTGTTGCATATATGGAGTTGCGCA CCAGCAGCACTAGTTTCAGTATACGTATTGTTTTTTAGTTCAAACGTTGC CAAAACAGAAATAAACAGTACTTGTACACTTGAGTTCAAGTAATTCACTA ACAACTTGGGGGTGGCTATAATTTGCATTCATTAAGAATTAGACGAGCAT CATGCTCTTTATTCCATAACTTAAAAAAAGCTGCACTTTATGAGAAATTC TCCAAATAAAAACATTCAGCGTGTCTCTGGTCCCAAAGGTCGCCTAAAGT TGACAGCCAACCCTACACCACAGCTTGGCTTGCTCCAACGTGAACAAATG ATGGCGCCAACAGGCGTACAGTAACATAAATCATTTCATTTTCTCGCGAC ACATGTCAAAATAGGCATTGACCATATCCCTGGTAAAAAATAATTTAATT AAGCAAACGGATTTTTTGCACGATGGGAGAAAAAATTAAAATCGCATGCA CGCATATGCAGGGTGGGCATCGAGCTGCCGACGGTGGAGGTGCGGTTCGA GCATCTGACGGTGCAGGCGCGGTGCCACGTGGGCAGCCGCGCGCTGCCGA CGCTCCTGAACACGGCGCGCAACGTGGCGGAGGGCGCGCTGGGCCTCCTG GGCCTGCGTCTGGGGCGGCAGGCGACGGTGGACATCCTGAAGGACGTGTC CGGCGCGGTCCGGCCGTCGAGGATGACGCTGCTGCTGGGCCCGCCGTCGT CGGGGAAGACGACGCTGCTGCTGGCGCTGGCGGGGAAGCTGGACCCGACG CTGCGGCGCGGCGGCGAGGTGGCCTACAACGGGTACCCGCTGGAGGAGTT CGTGCCGCAGAAGACGGCGGCGTACATCAGCCAGACGGACGTGCACGTCG GCGAGATGACCGTCAAGGAGACGCTCGACTTCTCGGCCAGGTGCCAGGGC GTCGGCACCAAGTACGGTAAGTACACCTAACCTGAACCTAGACCTAGCTT GCGGTTAGTGAGTGATGGTGAAATGATTGAGGAGTTGACTGATGGGTATT TCAAATGTGTTTTGGTGCGTGCAGATCTGCTGACCGAGCTGGCGCGGAGG GAGAAGGAGGCCGGCATCCGGCCGGAGCCGGAGGTCGACCTTTTTATGAA GGTAATTTCAACGGCTTTTCATGCATGGATGCTCAACTACTAAGCTCGAT TTGCCTAAAGCTAGAAATGGAGCCCCGTCTCTAACGAAATGACACTTGTA TGAAAAATGTACGAACAGTGTAGTACGAAACATTATTAGTGGCTGACAGG TATAACGAGATGCTTCACAAAGTAGGAAGTGTCTCTTATAATCACGTTTG TTTTCCGTAGCATACATATCATAAAAGTTGATTTGTCTAATCGCGTCCAC GATGATTGAATAATTTGGTGTGCAGGCGACTTCAATGGAAGGAGTGGAGA GCAGCCTCCAGACGGACTACACCCTCAGGGTAGGAGCCCTACCCCTTTCT GAACTTATTATCGCCTCCTCCTTGGATCTCCTTATTCTGAACAAGTTTCG TTTCCCTAGTTTTTACTCCAGTGACATAATGGCATTGACAATACTACATA TTAGTACTAGCGTTAAGCACAAGATTTTCCTCCTCAGAACCATATGATAA AAAAGTGTCCCTCTCCACGGCTACACCACATCACCACAGTGGCAAGAGTT TTCTCTTTCTCGACCATTGCCAGGGTTTTACTTTCACTCAACGGAGAGAA ATCCCAATCAATCGATGATGGACTGCATTGCACGGCGCAAAGCAGAGGCG GTATACAGATGGGCACGGTGGCGGCACACGGTCCACACAGGAAGGAGAAG CACCAGCCGCCGCGACCCGGCCGTCTCCACTAGTCCGCTGGCCCGACCCT CGACACGCACACCTGACCAGACCTTAATTGGAGCGAGTAGGTCAGTAGTG GTTGAAGCTGAGAGCGCCAGGATGATAAGCACTCGAGTGAGTGGTAGCAG CGGCAGAGGTCGGTAGTGAGTTGGCAGCGGGGTTGGTTTGCTTGCTACTC TTTTGACTATCACCACTGCACCATTTCTTCCTTCACCTGCCTGGGACAGG CACAGACACATTTTCCAGTTTCCACCACCGGTGGGGCCTCGATGTGCCTA GCTTTGGGGACGGGGGGTTGGTGAGCGCACGCCCCTAGACCCTAGTGCCA GCCAGCCACCAACTCGGCCCGATGATGATGATGATGCCAACGGCGTCGCG GCGGAGCAGCCCACGGCGCACCCGTGGCTCGCTGCGAGACCATGTCACGC CATGCCCATGACCTGTTTGCTGTTATGCCCGGCCGGAGCCGCGGCTGCCT TTTCCTGCACGGCGGGTAACGGTTGCTTTCGAGACATCTACCCTCGGTTA ACGAAAATCTACTTGCCGTGATTACCCTGATCGCGACGGATGTGAACATG CTAACGAGATGTTTTTTTACTGATGATGTGTTTTCTTTTGCTCGTGGGAG CAGATACTGGGGCTGGACATATGCGCAGACACCATCGTCGGCGACCAGAT GCAGCGGGGCATATCCGGCGGCCAGAAGAAGCGCGTCACCACCGGTAATA ATCTCATCACTCCGTCCATCATGCCTGCTTCATCATCACGCCATACATAC ACGGAGGAAATTGCACAAACCACCAACTATTACTGTCGTCGTTGCGCAAA ACACTAACTTTACATGTCTTTTGCACAGACCACCAACTATTGGTGTAATT TGTTGCACGTAGGTCCAAATCACATATTAGGTTGATTAATTGCAAATATA ATGACCAGGGTCCATGCGGTAGTGATGATGTGGCGGTCAACGTGTCTTTC TCCAATGTGTCGTTTCGAAAAAATAGAAAAATGAAAAACTTTTAGTAATT AAAACAGTATAAACTATCCTATAAACTAACTAATCTAGAAATGTTTGAAA GAATTTTCTTTTAGTTGTTGCAATTTTTTCATATTCTTTTGTATAAAGTT TTAAAAAAATACTAGATAATGGCACATGGACACCACATCCTCACGCCATG GGGCCCGGTCATTAGGTTTATAGTTAATTCACTTAATATGATTTTTGGAC CTGTGTGCAACATGTTACACCAATAGTTGGTGGTTTGTGCAGAAAGCATG TAAAGCTAGTGTTTTGCGCAATAACGACAGCAATAGTTGGTGGTTTGTGC AATTTCCTCTGCATACACGCATGCGTGCATTTCTTGTTTCTGTCTGATTA GAGGGTAGACGGGAGTAGGGTTGTATCTATGCGAAGGTTAGGAGCTTAGG ATGTCCTTCTTCTGAAAGGAACTTGCCCAACAAACATCCCAGTGACAATA CGGTTCCGGTGTCACATCCTGTACGTGCATACAGATGAACGGTGCTTGTG CCGCCGGGATGTGCCGCTGAGCCGAGGTCCACGAGTTTAGGGGCATGAGC GTTTGGTTGGGAGCCACGCTCAGCGTACCGCCATTGCATAGTTGTTGGAT GGTCGTCGATCTTTCCTCTTCAACTGTACGAATGAACGCTACGATCCAAG TCCTAGAGCAACTAATAACTAATCATGATCCTGACATGTTGGAGCTTCTA GCCTGTCCTTTCAGACTTCAGACTTCAGCAGCATCCTATCTGCACGTGAT GACAAATTACAGGGTTACAGGAGTCAATTTGCATAGCTCCAAAAACAATG GACCGCAAGTGCAGGGGATAAAATGAAAATGTGGCCGAAATTTGCTGCTG GGAGCCTGGGAATAGGTCGCATTACAGGCAGGTTTATTGATTGATAATGA ACATAATAGTCGCGCCGAGGTTTCTTTGGCTTGCTCCTCTTTACTAGAAA CAAGATACACCCTGTACATTTGGCCTTCACTATTCACATTGCATGTTGCA TTCTTCCTTAATGAAAAGTCAGTGCTCTTGCCAGTTTTCGAGAAAAAAAA TATACACTTACATTTCTGCATAATGAAATCTGATCATAAAATCCGGAAAG CAGCTTATTTTTTAGCTGTAGCAATGCTAAAGCAAACCATTTCATGTGGA TTTTGTGTCGAGGGGTCATGGGTTACTCTCTGCATGAGATTTCTTATAAC CAAACTGTATTGATTTATTCTTAACATGAAAAGGCAGAGTTTCTGTCAGG TTCCTTAATAATAATAGTACTACCTCTGTTCGGGATTATTAGTCCTAAGA GCTTTTTTATATTGTTTGAGATTATAAGGGCTATCTCATTTATTACTCTC TTTTGTCCAATGCATGTTCTTATTTTTCTCTCACTTTTCTCATGCATGTA GTACTATTGGTGCATGCATATATTAATGAGAAAGAGTTATGAAGTGTCTT GGTATTAGCAACTTGGCCCTTAGAACTAATAATCCCAAACAGAGGTAGTA CTCCGTAGTAGTAACAACGACAACAAAAATCGATTGATGAATTCGTAAAA TTTTAAGAACATTGCCAAGATGCATGATCTTTGAAACCCATCCGATATTT TGCATTGCAGGAGAGATGATTGTCGGTCCGACAAAGGTGCTATTCATGGA TGAGATATCGACTGGGTTGGACAGCTCCACCACCTTCCAGATTGTCAAAT GTCTGCAGCAGATTGTGCATTTGGGCGAGGCCACAATCCTCATGTCCCTC CTTCAGCCAGCCCCTGAGACCTTCGAGCTGTTTGATGACATCATCTTGCT GTCAGAAGGCCAGATTGTTTATCAGGGACCGCGCGAGCATGTCCTTGAGT TCTTTGACTCATGCGGCTTTCAGTGCCCAGAGCGCAAGGGAACCGCAGAC TTTCTTCAGGAGGTAAAATCATGCAGTGGCCTAGTAACCAGTTATCATAT CCCTGAAAGTTTCATTTTGTGATTTACATGAAAGCCTTGCATCTTGTCAG GTGACATCAAAGAAGGATCAGGAACAGTATTGGGCTGACAAACAAAGGCC GTACCGTTATATTTCAGTCTCGGAATTCGCGCAGAAGTTCAAACGGTTTC ATGTGGGGCTACAACTCGAGAACCATCTCTCGGTGTCATTTGACAAGAAC CGTAGCCATCAGGCTGCCCTTGTCTTCTCCAAGCACTCGGTGTCGACTCG AGAGCTCCTCAAGGCATCCTTTGACAAGGAGTGGCTCCTCATAAAGCGCA ATTCCTTTGTGTACATCTTCAAGACCATACAGGTGGGCATAATTTTCCCG TCCAGTTCTGTCACTTATTAAAATCCACAATGCAGTTGACCTAACAATGT TTCTCGGTGAAATCCAAAGCTCATCATTGTAGCCCTTATCGCTTCAACGG TGTTTCTGAGGACCCAGATGCACACAAGGAATTTGGATGACGGTTTTGTC TACATTGGAGCACTGCTTTTTACTCTGATTGTGAACATGTTCAATGGTTT TGCTGAGCTCTCCTTGACCATCACAAGGTTGCCGGTGTTCTACAAGCACC GTGACCTCCTCTTCTACCCTGCTTGGATCTTTACGCTACCGAATATCGTT CTCAGAATCCCCCTCTCCATTATCGAATCTGTAGTCTGGGTGGTTGTCAC ATACTACACTATGGGATTTGCCCCAGAGGCTGACAGGTACATATGGAGTA GACAACCTTTCGATTCATGAATCAGGAACTGTCAGTTATGTGTCCATTAA ATTGCCATTTCTGTGCACAGATTCTTCAAGCAGTTGCTGCTAGTGTTCTT GATCCAGCAGATGGCCGGCGGGCTTTTCAGAGCAATTGCTGGCCTCTGTA GATCCATGATCATTGCTTCAACAGGAGGAGCCCTTTTCCTTCTCATCTTC TTTGTTCTTGGAGGCTTTCTTCTTCCAAAAGGTCAATTACTTATCTTGTT CAGTTTCACTTCACATTTGCTTCTGCAGAGGCAGCTTTGCTGACTTGTCC TTTGCTCTCCATTGTTAACAGATTTCATCCCGAAATGGTGGATCTGGGGC TATTGGATTTCGCCACTGGTGTATGGATATAATGCTCTAGCAGTGAATGA ATTCTATTCTCCTCGGTGGATGAACAAGTTTGTAATGGTTAGCCCCCTAC AGCACTGCTCTTTCACTGGTTAACGTCCATGCTTTTCTAACAAGCTGTGT TTATGTTGATAGGACAAGAATGGTGTTCCTAAAAGACTAGGTATGGCTAT GCTAGAAGGCGCCAACATATTTACTGATAAAAACTGGTTCTGGATTGGAG CGGCAGGGCTGTTAGGTTTCACCATCTTCTTCAATGTGCTCTTCACTCTG TCCCTCACGTATCTGAATCGTAAGTATAGAAAAATTAATCTTAGTACCTT GTGAGTTCTAATCATAATTTTTGGATCAGAATGTGACCCACTTATTCTTA ACTGTCAGCTCTGGGCAAACCACAAGCTGTTATATCTGAAGAAACTGCAA AGGAAGCAGAAGGCAATGGGCTCCCAAGAGATACAGTAAGAAATGGCAGC ACAAAAAGAAATGGCAGCATAAAATCGAAGGATGGTTCCAGTAACAGTAA GCAAATTCTACCTGGATTCATAAGTAAATACTAAAGTAAAAGTTTCAAAA ATTGGTGACTAATACTGTCATTCTTTTAGAGGAAATGAAAGAGACGCGAT TAAGTGCTCGTCTGAGCAATAGTTCATCAAATGGGATTTCACGAGTCATG TCTGTTGGCAGCAATGAAGCTGCGCCAAGAAGAGGAATGGTTCTTCCATT CTCCCCTCTATCCATGTGTTTTGATGATGTGAACTACTATGTCGACATGC CTGCAGTGAGTTTACCTCTGCACACTTTTGTTAGCATTTCTCCATGTTCC TTATCTTATCTTCCTCCTCAATTTAAAATCTTGAATATTTATGAGCTGTT CTGTATCTATATAGGAAATGAAACATGAAGGAGTGACGGATGATAGGCTC CAATTGTTACGTGAGGTTACTGGATCATTTAGGCCAGGAGTGTTGACAGC ACTCATGGGAGTCAGTGGAGCTGGAAAGACGACTCTTATGGACGTTTTGG CTGGAAGAAAGACTGGTGGTTACATTGAAGGAGATATAAGAATTGCTGGT TATCCGAAGAACCAAGCAACATTTGCACGCATTTCTGGCTACTGTGAGCA AAATGATATTCATTCACCTCAGGTCACGATTAGGGAATCTTTGATATACT CCGCCTTCTTGCGTCTTCCTGAAAGCATCGGGGATCAAGAAATTACTGAT GATATCAAGATGGTAAGTCATGTGTTTCTGCCTGTCAAATAATGCTATGT GTGTAGTCGCATCCTAACTTGTCTTGTGATTTTGGTACTTCAACGGGATG AATTAAGCATTTTGATTTCTATGTTACCATTAGCATATACCTCTTAGAGC TTGGTGTAAGATGTTTGAGATTTGATAAATATGATAAGATGTGTTCATAT ATGTTTTTCTTTATTTTATCGAGCTCGCACCTGACATGCTTCAGTGTTTT CAGCAATTTGTTGACGAAGTTATGGAGCTAGTGGAGCTTGACAATCTGAA GGATGCTTTAGTTGGCCTGCCAGGAATTACAGGGCTTTCAACAGAGCAAA GAAAGAGATTGACAATAGCTGTAGAGCTTGTTGCAAATCCATCAATCATC TTCATGGATGAACCGACATCAGGTCTTGATGCAAGAGCAGCAGCAATTGT CATGAGAACAGTGAGGAACACAGTCGACACTGGGAGGACCGTGGTTTGCA CAATTCACCAGCCAAGCATTGACATCTTTGAAGCTTTTGATGAGGTGACT AATGAACATAAACAGTTCACTTTAAGTGGTACTGTGGTAGTTCATATTTT TCAGCAATTAAACTATAATGAGTCTTTTGTGCAGTTGCTATTACTGAAAA GAGGAGGCCAGGTAATATACTCTGGGAAATTGGGTCGTAACTCGCAGAAA ATGATTGAATACTTCGAGGTACATATAATTTTACATTATGATGTTCATTT TTCAGTGGTAGATCTCATATAGATAATGACAAACAAAAGTAGCCGCCTGA TCTTCTATTCAATACTACCAGGCAATTCCTGGAGTGCCTAAAATCAAAGA CAAGTACAACCCTGCAACATGGATGCTTGAAGTCAGTTCGGTTGCTGCAG AAGTACGCCTAAGTATGGATTTTGCTGATTACTATAGGACTTCAGATCTG TACAAGTAAGCAAAACATTTTTGGTCACATGGACCTCTTCTGTGCTTTCT CCAAGTGTTCAATCGCCGTCCGTTTTAAGTAACAAAATTTTCATGGCATA CACTGGCTGTGTTTCCAGGCAAAACAAGGTATTGGTGAACCGGTTAAGTC AACCAGAACCAGGAACGCCAGATCTGCATTTCCCTACAGAATACTCTCAA TCCATTATAGGGCAGTTCAAAGCCTGCCTCTGGAAGCATTGGCTGACATA TTGGCGCAGCCCAGATTATAACCTTGTCAGATTTTCTTTCACTTTGTTCA CAGCCTTGCTGCTCGGCTCCATCTTTTGGAAGATTGGCACCAAGATGTAA ATACTGTACTTCTCTTCATTTTCGATTCCTTAATCATAACCATAACGTAG AAGCATCTGAATTTTTTGTGCCTTATGATGCAGGGGAGATGCCAATACTC TTAGAATGGTCATTGGAGCAATGTACACGGCAGTGATGTTTGTCGGTATC AACAATTGCGCAACCGTTCAACCAATTGTTTCAATTGAGAGAACAGTTTT TTACCGAGAGAGGGCTGCTGGGATGTACTCTGCAATGCCGTATGCCATTG CTCAGGTAAATATAAAGTAAATTCAAAGAGTTACCAGTAAACACAGTGGT AGCTAAAGTAGTAAGTTGTCATTGGATTGTTTGGGCATCTCAAGCCTTTT TTATTGTTTCAGGTTGTGATGGAGATACCATATGTGTTCGTCCAAGCCTC GTATTACACCCTCATCGTATATGCTATGATGAGCTTCCAGTGGACAGCTG CAAAGTTCTTCTGGTTCTTCTTTGTGTCCTACTTCTCCTTCCTCTACTTC ACCTACTATGGGATGATGACTGTATCAATCTCGCCAAACCATGAGGTTGC AGCCATCTTTGCCGCAGCTTTCTACTCCCTCTTCAACCTCTTTTCTGGCT TCTTCATCCCAAGACCGGTGAGTTGTGTTCTCACATTTGACATTTGTTGC ATTTGTTGCTTTTTTTGTAAGATCAACTACTGACTTTGATCTTATTTTAT CCAGAAAATCCCGAGATGGTGGATCTGGTACTACTGGATCTGCCCATTAG CATGGACAGTTTATGGGCTCATAGTGACACAATACGGAGACCTGGAAGAT ATCATCTCCGTCCCGGGCCAATCCAACCAGAAAATCAGCTACTACATAAC TCATCATTTTGGATACCACAGGAGCTTCATGGTAGTCGTTGCACCAGTGC TTGTGCTCTTTGCAGTGTTCTTTGCGTTCATGTATGCTCTCTGCATCAAG AAGTTGAACTTCCAACAACGGTAGGAGGGAAAAAACAACAGACCAGATGA CAGGAAAATGGTCGATTTTTTTCTGAACCAACTCTTCTTTTATCCTTCCA TTTTTGGCTCTATTTATGCAGTGTCAGTGTAAATATGGGTGTAGTTTTTT GGATTCCGTA

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.