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GrainGenes Sequence Report: Ta.26907.1.S1_at

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Sequence
BE497109
Contig
Ta.26907.1.S1_at
NSFT03P2_Contig15404
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC279914
wEST map position
BE497109
NCBI UniGene
Ta.24659
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, weakly similar to NP_001063794.1 Os09g0538000 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
1BL
1DL
Clone Library
Wheat heat-stressed seedling cDNA library
Tissue
Leaf
Developmental Stage
Two-week old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0764_D07_G14ZS Wheat heat-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0764_D07_G14, mRNA sequence.
Other Name
WHE0764_D07_G14ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA015E1X
Clone
WHE0764_D07_G14
Probe
WHE0764_D07_G14
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Two-week old seedling were heat treated at 37 C for 2 hr and cyclic heat treated at 37 C for 2 hr for two days at Texas Tech University (D. Zhang, H. Nguyen lab). The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.26907.1.S1_at720WHE2AFFY
Ta.15687.1.S1_at129WHE2AFFY
DNA
ggcttcccctgccattgccgtttctgattctggtacctactaccagattg
gtttaatgtggccgggagcatactgcgcgcagaccacccgcggatgctgc
atgcccaagagccctgtcgtgccggcggccgacttctacgtatcgggctt
taccgtcttcaacgcgacgaccgacgcccccgagaccagctgcagcagca
ctcctctcaactccgacgagattctggaaatcagcggtctgaggcagttc
tggagcaacatcaagtgccccagcaacaacggccagagcagctggaagag
cgcctggaagacgtccggcgtctgctccggcctcgacgacaaggcctact
tccaagccgccatcgccctccgtagcaagatcaaccccctctc

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