GrainGenes Sequence Report: NSFT03P2_Contig10179
Sequence
BE497093
Contig
Ta.3010.1.A1_at NSFT03P2_Contig10179
Tracefile
[ Download ] [ View ]
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC282423
wEST map position
BE497093
NCBI UniGene
Ta.3010
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001067111.1 Os12g0576900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
5AS 5BS 5DS
Clone Library
Wheat heat-stressed seedling cDNA library
Tissue
Leaf
Developmental Stage
Two-week old seedling
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0764_C03_E06ZS Wheat heat-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0764_C03_E06, mRNA sequence.
Other Name
WHE0764_C03_E06ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA015E1X
Clone
WHE0764_C03_E06
Probe
MAG706
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Two-week old seedling were heat treated at 37 C for 2 hr and cyclic heat treated at 37 C for 2 hr for two days at Texas Tech University (D. Zhang, H. Nguyen lab). The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.3010.1.A1_at 1053 WHE2AFFY Ta.3010.1.A1_at 492 WHE2AFFY TaAffx.52721.1.S1_at 317 WHE2AFFY TaAffx.52721.1.S1_at 90 WHE2AFFY
DNA
gacgccgaagtatccttgtggccaacatccggagctacatgggaggggtt
gacctgtggaagaatgaggatagtgtctccgacactttccaacctcaatc
catgcatgacaagacgctggaagtagttagcttcacaggaatgctgcatc
ttggaaggctgcaggtagggctttctcgcgcgcaaaggttggctcaaggg
catcatataaagattgagatcactactccgatgcccatccaagtcgatgg
agagccatggtctcaggagccatgcaccatagaagtttctcatcacgccc
aggccttcatgctgaagagagtctctgaagagcctataagccacgccgcg
tccataatggccgacatcctggagaacgccgagaacagcggcaccatctc
ggcctcgcagaagagtgctctgcttcaggagatagcgtctaggcttttgt
agcaaactcttctgtgcaacacggtcttgtagctctgtagttggccctat
agcatttgaccatgtctggccccttctgtacatacagccatggcttcctt
ccttcttggatcgagcttgtgtataatttctgtaaaattttg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: NSFT03P2_Contig10179
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
|
![]()
![]() ![]() GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||