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GrainGenes Sequence Report: NSFT03P2_Contig17968

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Sequence
BE496826
Contig
Ta.1167.1.S1_at
NSFT03P2_Contig17968
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC309636
wEST map position
BE496826
NCBI UniGene
Ta.1167
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Ferredoxin-NADP(H) oxidoreductase (fnr gene), clone 2'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
6AS
6BS
6DS
Clone Library
Wheat heat-stressed seedling cDNA library
Tissue
Leaf
Developmental Stage
Two-week old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0761_G09_N17ZS Wheat heat-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0761_G09_N17, mRNA sequence.
Other Name
WHE0761_G09_N17ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA015E1X
Clone
WHE0761_G09_N17
Probe
WHE0761_G09_N17
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Two-week old seedling were heat treated at 37 C for 2 hr and cyclic heat treated at 37 C for 2 hr for two days at Texas Tech University (D. Zhang, H. Nguyen lab). The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.1167.1.S1_at599WHE2AFFY
Ta.28806.1.S1_at272WHE2AFFY
DNA
ctgcggctctactccatcgccagcagcgcgctgggggacttcggggactc
caagaccgtgtcgctctgcgtcaagcgcctcgtctacaccaacgacgccg
gggaggtcgtcaagggcgtctgctccaacttcctctgtgacctgaagccg
ggttcagaagtgaagatcactgggccggtgggcaaggagatgctcatgcc
caaggaccccaacgcaaccatcatcatgctcgcgacgggtacgggtatcg
cgccgttccgctccttcctctggaagatgttcttcgaggagcacgaggac
tacaagttcaatggcctggcatggctcttcct

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