Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: AA042409

[Submit comment/correction]

Sequence	AA042409
Germplasm	CC7277 (oat)
Species	Avena atlantica
Probe	AA042409
Reference	Maughan PJ et al. (2019) Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species BMC Biology 17.
DNA	CTCGGTCAGATGACTCGTCACTTCCCCAGATCCATCCACCCCCGACCTCC TCACACGCAAGCGCAGTTCAAAATTCGAAATCGAGCGGAGAGTCCCAACA GCTGGAAGACCCCATTGGCCATTACTAATCTCCGCTACCACCCCGCTCCC CCTCACTCTCCTCCACCCCAGCTGAGCTCCACGCCACCTCACTCTACCAC CACTGCACCTTCCGCTCCACCCCCACCTCCGCCATGGCGGCCCCCGGGGT TGGCGGCGGCGGCGGCCGCCGCGCCTCTCGCCGCGCCGCGCCAGAGCCCA ACGAGAACGACGACCTCGCCGCCGGGTCCTCCTCCTCCTCCCCCTCAGCC TCCGCCGTCACATTCGGCCCCGCGCCGCCGTTCGCGCTGCCCCCGAGGTC CCCGCTCGCGGCCATCGCCGACCCAGGCAGGAACCCCCGGTCCGCGCCGG GGACGCCCAAGTCGCTGGCTGGCACGCCAAGGGCCTGCACGGTGGCGTCT GGGGTCAGGGATCGGAGCTCCTCGATTGGTGGAGCGGCGAAGCGGGTGTT TGATCCCAAGGATCTGGCCGCCGCGGAAGTGCCCGTGGAGGTGCCGCATT TCGAGCTCGACGAGGATCCCGCCTTCTGGATGGATCGCAATGTGCAGGTT GGTGTGTCTGTGGACTAGATGATTGCACAAACTGAAATGTTTCTGAAAGT GAAATTTTGCAATTAGCCACTGATGCATAAGTTGATGACCATTTTGTGTC CAGCTAGATTAGCAAACATCACAACGCAACAAAATGGCCTATACCATTAC CCAAGTACTTCGTATTACACATTGCCTAACTAGCCAAATCGTAGTTTAAT ATCATACCAGCTGGCAACTGGGAGTTCATAGTCAATATCATGGCTAATTC TATTTTGTATCGGTACAGTGCCGTGGTTCTGAAGGTAATATGACTGATTG TTGGTGTTTTTTAATTTTACAAATCTAAAAGTTGGGGTGATTTGCAGGTT TTAGTGCGAATAAGGCCAATCAGTGCAGCCGAGAGCACTGCACATGGTCA AAGAACATGTTTGATACAGGATAGCTCAAAGACATTAAGCTGGATAGGGC ACCCTGAAACAATGTTCACGTTTGATCATGTTGCCTGTGAAACAATATCA CAGGTATGTAGTGTTTACTGCTACTCACTTATATTTCTTTCCGAAGAGGT CAACCTTCAGCCTAAGAATTATACTCTACTACGATTTCAGGAAAAGCTGT TTAGGGTAGTTGGTCTACCAATGGTGGAGAACTGCATGTCTGGATACAAT GGCTGTTTGTTTGCCTATGGCCAGGTAAGACTAATATGCACACTTTTTTG CCTGCTCAAGAATTCGTCTGGCATCCATGTGGTTACATACCAACCACTTT TACAGACCGGGAGTGGCAAAACTTACACAATGATGGGAGAACTTAGTAAG GAGGGCGATGAACTTAACAATGACTCTGGTTTGACGCCTCGCATTTTCGA GTATCTATTTGCTCGAATAAAGGAGGTGAGGTGTTTGTATGCCAGCCTGA TACTTTGATGCTTTTTTGCTAATAGATGGACCTAAATTATATATTATTTG AAGGAAGAGGAGAGACGAAGAGACGACAGACTGAAATATATCTGTAAATG TTCTTTTCTGGAGATATACAATGAGCAGATAACTGATCTGCTTGAACCAT CATCAACCAATCTTCAGGTAACCTGCTTAGTACTTGAGAATTGGTAATGC ATGTACTAAATGTGAGATCTAACAGACTCACACTTATTTTTCCTTTGTAG ATCCGTGAAGATATAAAGAAAGGTGTATATGTTGACAACCTAACGGAGTG TTATGTGTCATCTGTTAAAGACGTTATGTTGTTATTGTTACAGGTGACAG AATATCTTCTCTTCATTGTACGTTTAACTGAATCATAGGAACTATAATGG GCATGAGCTAATTTCCACTAATGCATTTATTAAAATGTTATTTTAGGGGA TTGCTAATAGGAAAGTGGCAGCCACAAATATGAACAGTGAGAGCAGCCGT TCACATAGTGTCTTTACATGCGTCATTGAGAGCCGTTGGGAAAGGGATTC AATGGCACATCTCCGCTTTGGGCGGCTGAATTTGGTTGATCTTGCTGGTT CTGAGAGGTGAGTCACAGAATAAAGGTAATGGCCTTTTCATGTCTTGACA AATACTGACTGAATTCCGACTAGGCAGAAAAGCTCGGGTGCTGAAGGAGA ACGCTTGAAAGAAGCTGCAAACATTAATAGATCCTTGTCAACTCTTGGGT AACGTTTGCTCTCAGACAACATTCATAAATTTTATATAGTTCATATACAT TCATAATTTTTTTACAGTACATGTATTTGGGTACTAAATCAACAATTTAT TTCAAGAAGCACTATTTATGGTGATAATCCGTCTATTCGGTTTCAGGCTT GTTATCATGACTCTAGGGGAAGTCGCTAATGGGAAAAGCCGCCATGTGCC CTATAGAGACTCAAGGCTTACATTTCTCCTCCAGGTTAAAATTCACAATG AAAACATGCTCCTGAATCTTCTCTCTGTTTGTATTTGATTTCTCTGGCTC ATTATACCTTTCTTCCCTAGGATTCTCTTGGAGGAAACTCTAAAACAACA ATTGTTGCCAACATCAGCCCATCTATTTGGTATCCAGATTATGTACCTTC ATTTCGAGAAGTCAGTTTAGCTTTCTAGATCTGAATAGAATGCTTAACCT ATATTTGGATTACACTACTGCAGTTCCTCAAATGAGACATTGAGTACCTT GAAGTTTGCTCAGCGGGCGAAGTTGATTCAAAACAATGTACTTGTGTTCT GAGCATGCTGAAGTTTTGTATAGAAATTTTATATTGTTTACTCATTTGGA GATTCTTCTATTTGTTCTAGGCAAAAGTAAATGAAGATGCTTCAGGAGAT GTTATGGCTTTACAAAGGCAGATAGAAGAACTAAAGGTAAGCTTCATCAT GAAAGCCCTTTTCTGGATTTTACAAGTTTTTTTAGTTAAATTATTTAATC ATCTTTACCAGGTTCAATTAACATGCTTGAGGAAGCAGCAAAATGTCCCT GGATCCCCTAGCTTTCACCTGCTAAATTCAGGCCCTGATAATGAGTATAA TACATTAGCTGAAGATCATCAATCAAGCTGTGATCTGAATCTTCTAAAGC AAAAGGTCATATACCATGATTTACTTCATTGGAAAATAAATAATGAAGTG CTACAATTTACTTGCAACCAATTACTTATATATTTCTAATGCAGGTTAGC CATCTGGAAGCTGTTTTGGTTGGGAGCCTTAGGAGAGAGAAACTAGCTGA GGTGGATATCAGGAAGCTGGAAGCTGAAATAAAGCATTTGAGTCGTTTGG TAATACTATATTCTTTTATATGGCAAAGCTCAAGGATACTGTATATTCTT CAAAGCCACAGAACTTAATCATCTTCCACATGAATAGCTATTGCTGCCTT TGCAGTGCGTGCCTCTTAGATATTGAGTGACACCAGTTATCTGTTTTGGC AGGTCGACCTGAAGGAATCTGATTCCCAACGCTTGAGGACAATGCTGAAA CTTCGTGATGAAAAACTAACAAGATTGCATTTGTTAGCAGATGATCTAGT GCCATCTGATGGATATTTGGTTGATGAAAATGCTGCAATGTTCCAAGAGA TTCAGCTGCTGCAAAAACAAATCAATGAAAATCCCCAGTTGACTCAGTTT GCTTTTGAAAACAAGAGATTAATTGAGCAAGTTAGAACGTAATGTCTTAA TATCACAGTTTTGAGTCGTTGCAGTATGAGTTTGTAGCAAATACACTTTG CACAGGAAGTTGGTATATTTACTTGAATAAACTGGTAATACTTGCTCTAC TTACGGTACAGGCTTCAGAACTTCCACAAGCAGGGGGAGCGAGAGATGCT ATTAACAGAGATATCTCTTTTGCGTAATCATGTATGTTTGTTGTCCCTGA ACTTTTTGCGTGATCTCATTTTCTTTGGTTTCGCTTGTACTCTTATCTTA TTATTATATATGTGTAGTTCCTTCATATTCTTGAGCAGAAGTATGCCATG CCTCCTAAGAATGTAGAAGCTCAGGTGTGTTCTCATTTGGATATAATGTT ACTTCGAAATCACTTATCCACATGGATTTGTTTCCTGCTTCTTTTTCCAA AGATGGACCAAACCTTAGTAGTACTGAATTGACAAGAACCAATATTGTCA TATCTTAACTTATATAGGGGAAACTTTGTATTGGCCACATGTCCCAAATG TATATGTAGAATAACCTTAATCTTTGTAAGTGATTGATGTGGTTTGCAAT GCATTTAGGGTGACAAGATTACCAAGAATCTAGACAATTGCAGGAAAGAG CTGGATGCGTGCTTAGAAAATAATGTTCTGCTAGCTCGGTAAGTTCCTGG CTACATTAATACTATCATCGCGGTCTATGTTTGCATTTACGAACACAATG GTCCGCTAAGCAATACTTTCTGTTAAAAATCCTGCATTATGTGATGTCTT GATTAACTAAATACATTTGAGTTTCAGAAGATGAGAATGACTGAACACCC ACGTGGTGAGAAAGCAAATGGAGCAGCATATGTCCTCATTCTGACATGTC TGTTAAATCTGGAAACTGCATAGTAATAAACTATATGTTGAATTTAGCTT CCTCTCCCTATGCAACAAAATCTTGATGTACTCAATTGGTAGTGTCAGTA ATTAATGGAGATCTCATTATTTATTCTTCATCTATCTATACTTCTTGAGA ATCAGGAAATTCACTCTGATAATTACTGTTACACACCTTATGTCTTCTTG TTTTGGGTATACTGGTAATTGACTGTTAGGATTATTCATATTGTTTGCAG TGAAGTAAATAAACTGCGGTGTGAACTGAAACAATACCAGAAGTCTAGTG CTTACCAGGTATGTATGAAAATTTTGCAGCCACTAGCAATTCTTTGTACT CCGGTGTTTTGATGTTCATCGCCATTCAGGTTGCTCTAGAGACAGAGACG AATCAGGTGATCCCAGAGATTAGTCAGGTGCAACATGTGAGATGATTACA CATTTTTTATTTTTGTTCGATAGCTAAATATTTCATTTGCTTTACCTTTT CTGTAGCCCTTATGTTTGAACTTTATATCAGGATCCAGTGGGATGGAAGT TCTCATCATTAGCGTCCAATGATGCTGAGATAACAACAAATGGTACGGGG TCAGTTCAACTGAAGATACCTTCTGAAATTACTAGTGAAGACCAGGAGTC CCATTCTCATCTGTATCCCTTTTATTCAGAAAGATGCGGTGTGAATGGTT CTAAACAAGTGCCTGAGTGTGGTGATGAATTGTCTGAATGCTATAGCTTG GCTCTTGGATCCTCACATAAGATGTTTGACAAAGGCATTATACTTAGTGG GCACAAAGAAGATGAAGAAAGGTTGACTTTACAGCAGGATGAAATAGATC AAATACATGAAAGCGTACCAAATATGGATACATGTTTGCATAGAGAGACC TCACTGTGTCATCAAGAGACAGAAATACCGAGCTCAAGTAAACAGTCATT ACAGGCTGAATTGGTGCACATTAAAAGCACAAATCAAGAGCTCAGAAAGA AGTTAGTTACTATGGCTGAAGAAAGTGCCAAGCTTGCAGAGATCATTGTT GTGAAAGATGTAGAAATTGCCTCTTTGTCAGAAGAATGGGAGGCGGCAAT AGTTGATCTAACAAGCTTCTTGACAGATGGCTGCAGATCACTAGACGATG CATATCAGAATATTGATAATATGATTAGTTCATTTCCTTACAGCAATAAT TCTGTCAGTGAACATGTGGAGAAGGCTATGAAAGTTAGCATCGAAAAGGA AAAAATAATCTTCAGGCTTCAAATTGAGCTACAGGCTGCACACCGAATGG GCAGGGACGTGAAAGAAAAGTTGCACATCTTAAGAGGTGCAACACTTGCT ATTACTGAAGCTCAGCAGTTATATAATGATGAAAGTTCTCAGGAAACACA GAGAGGAGAAAATAAGTGCCAACATGATTGCAATGTGGATCAGCAAAATT GCCTCTTTGCAGAAGCAGTAGAAAGACAGAATGGCATGAGTGCACAGCTG ACTCATAATGAAGATGGATCAGCAGTCAGTCCAGCTAATCCAGACTACCA GGTATGCACTCTTTACTATAGTTACATCAATTGTATGGTTTAGTGCACCT GATGCAAAGATAGCCGGTGATAATGTTTGTGTAGTCAGTCTCGCTAGGAT GCTTAGCAGGGAGCTTCTGCACTGCTACTGATGTTTGTCTTTATTTATGC TACTAACCATTCTCCATTCTTTTCTTTTCAATGTTCATTTTTTCTGGTTA TAAACAAAAAGGTCGATAATGTGCATTTCATTGTTCCACTACCTTGTAGT CAAAGCTCGACGATGTGTTACATCTTGTTGAAGACAAGTCAAATAAGGTC TTGGCCTTATTTTCAAATTTTGAGGAGGCTCAAGAAACCATGGAAGAAGC TGACCTTATGCTCACAGCTTTGTTGAAGGCCAATGAGGAGTTAAAACTTG AAAAGGATAGTTGCAGCGAAGCAGTGGAACTTTTATTGGCTGAGAAAAGT TCTCTGGTTGACGAGTTGCAGCAACTTGAAGCATCAAGCTCTTGTACAGC ACAGAGAAACAACAAATTACATCAACAGATGAATGAATGTATCAAGGAGA TGACAAACATTGCTACTCTAATGAAGGGTTCATTTCACCAAATACGGCGG GTTACTACCGAAGAACTCTTTGGGCTTTGCTCTGAAATAATTAATTTTGG GCAGGAATTAAAGAGATGGATAAGTGATTCAAGGTCTTATCTGGTAAGCG TTGTGTCAGTTCTAGAAGAAAAGGCCAGTTCTTCAGCTCAGCAGGTGCAT CTCCTTAATGCAAATGCTTATACATGCGTGTGTCAACGAGTTGGCTCACG TTCATGTGAGGTGGATAACAGCAATGCTGTTTTTCTTCACGAAACTCAAT CAATACCGGAGAATTCTAGGGAGCATATTATATCTTTAACTGATATGACT CAAGAAGGAAAGCCATCCATGCATGTCGTTCCAACAGGCAGTGCTACCAA ACTGGAATATAGTAATACAAACAGTACGTGTGATATGACTGTTATTAAGG ATATAGTTTTCAGTATTGCTCAAGAGTGGGATATCTTCATCAACAACGTG TCCTGCATTAAGATTGCTGAGACATATCCAGGTTTTTCTTGTGATGAACA AATATACTCAGCGGTTCCATTGCAATGTAAGGGAAGCATAGAAGGCCACT CTAGAGAGGAAGATATTACAGATCTTCTGAATGATGTTCAATGTCTCAAG CATAATTTAGCGCAGTTAATGATCCCTCTGTTTAATTTTATCAATAAAAC AGACGTTATGGGGGATGGAACAGGAAATGAAAAGCTGTTTGTTACTGTTC TGAATAAGGTGCAGAAGAACTTGATTTTTTCTAGAGATTTCTTTCTTTCT CTGTTACTATCTGATCGGGAAGGTTTTCAGAACACACCTTCGCTTAGCAG CATCTTTCATGACATTGGCAATATTGAGAAGAAAGCTTTCAAGCATCAGC AAATCTGCTTACAGGATGGTTATACTCGGGCTGGTTACAGTACAGACTAT GCATCACTAAGAAGAGACTATGACAGGAAAAGGGATATTGCAGAAGGATT GTCTTTTGACCTTAAACTACTGCAAGAGTCTACCTCATATGGGAAGGACA TGAAAGATAAAGCTGACGAAGTATCAGGTGCCCTTAGAAAGGTTCAAAGG GAACTTGAAATCAAAACTTCTGAGACAGAAGAAATGCTGGTAAAACAAAA GGCACTGGTGGAAGAATTAGTTAAAAATGGTGCTGCACTCAGTACCTTAA GATCAGAGTTAGAGCAATCTCAAGGTTCATCATCCGTCCTGTTAAAGGAG AATAATGATCTGAGAGTGATGTTGGAGGAGGAAACTGGGAAGACCAGTGA AATCAAAGCTCTCTTGGAAGAGAAAGCTAAGGTCATAGAGGGATTGGAGA GCGAAATCCTATTGCTTAATTCTTCTGAAGAGGGACAACTAAGGTCAGAT ATCAGAAAACTTAACAATAATGTTGAAATATTATGTAATGAAAATGGAAA GCTCAAAGCAGAGATACTTAAGTTAAGTGACAAGCTTGAGATGACAATGG CTTTAGCTGAGGAGAATGAAGCTGCTGCTGTTGAAGCTCGGCAAGTAAGT ATTGTATTACTAGTGCCCTTTGCTTTCTATACAATTTATGCAATGATTCA CTTGTCCTGCTTTCGTAGACTGCAGAGATAAGTAAAATTCACGCAGAAGA GAAAGATGAGGAGGTTACGATTCTTGAACGTTCTGTTGAGGAACTTGAAT CTACAATAACTGTTCTTGAGGAAGAGGTAAGTTCATTTCTCTAATCTATT GTATTTCACTGTTATGATAATCTGTTTGAGTTGTTGCATAAACACTGTAA TGGTTGCTAGAAAGGTTACGGAATCACCGTATGTCCATAACATAGAAGGA TTAAGTAACGTTAGATGACCCAATTTTTTTTCATGTCAAAAAAAAAAGAT GACCCAATTTTTTTTTGCAATGATCTAAACTGAGTTTTTCATGTGTATCT TGTAAGGATTGGTGCAAAAATCAAGTGATTTGATGAATAATTAGACTTCA ATGCAAATTATGAGTTTCATCATGAATCTGTTTTCACTGAAGGTATGCAA CCTTAAAGAGGAAGTAAGGAGCTATCAAGCACACAAACAATCCGAAGCTG AATTTCAAGCAGTTGACGAGATGCTTAAGGTAGAAAATTCCTCAAGATGT GATGGCAATGAAGAATTGTGTCCAAAAAGATGCCAACTCAAAAAGTGAGA ATTTTTCTTCCTCTGTTTTTCTTAAAGGACCCTGTCAGACATACTTGTAT AATCATTCAGTTGATTGCACTTAATCGTAGGAGACTGCGAGCTGAGATCA TTGCACATCAAGATGCTACAAGGAAGATTGAAGGACTCAAACTGGAAGCA AAACGTAAAGATGATGAGGTATATGCAGAAAATAATCACATACAATTCAC TGAGTTCTGCATCATCGAATAATCTTCTAATAACTTAGTCGCATGTATTA ATTTAATCATCTATATACCATTTTCATGTACATAGATAAGGCAATACAAA GAGCATATAGCGGAGCTGGTCCTACATTCAGAAGCACAATCATTGCTGTT TCAAGAGAAGGTACAAGACATTCAGCTATTATATCTTGTCAATACAGTTC TACAACTACGGAACACTACACAGTTGCTAATAATTCTTCCTATACAGTAT CGGGAAATGGAGCACATGGTTTCTGAACCGAAGTTTGTTCCACATGAATC TAGCTCTGAGACTGTCCATGCAAAAGTTGAAAAGCCATCGGGGCGAATAA GAGGGTCCGGCTCACCTTTCCGGTGCATTTCTAGCATTGTTCAACAAATG AATTCTGAGAAGGATCAAGAAATCTCTTTGGCGCGCCAGCGAATTGAAGA ACTTGAAGCGTTGCTCAGTAACAAACAGAAAGAGGTAATGTTTTTGGCTT GTTTTTTATCATATTTAGGCAAATTAATTGGCAAAGGTCATTCATAATCT TATATATCTATTATGGCTAAAGAGGTTGTTGGACTTGGTGAAATAACTGC TTCTGTTAATTACATGGATATTCTGTCACGCTGGTATATATGTCCTTAGA TTACAATACGATCCACTGCACTTACTGGTTAAGACATGTCCTTGCTAGTT GCTTGAAACCATGTTAAATGTCATGAATATGAGCGTGTACTTGAACAATA TGTAAAGAGCATTTTTATATCGATTCGAAGAACGTGTGATTTTTCATATT CTCTAGGAAATATTAAAAAAGCAGCTGTGTTCTGTGTGTTCTTTTCTAAT TTTAAAGCATATGAATTCAATTCCCATTGTTGGAATGAAGTGCCTCAAAG GCGATGCTCATATTTTCTCCTGTCTTCTCAGATATGCTTGCTAACATCAA GACTGGCAGCTGTGGATAGCATGACACACGATGTTATAAGGGAACTACTT TGCGTCAAGTTAGACATGACAAACTATGCTGTAAGTTGCAGCAGTACCTT TAGGGAGAGCTTCATGGCCCATTGCCTACCAGCAATAAACTTATCTGTGT TTTTTTTTTTTGGTTCGCGTGTCTAGAATTTGCTTGACCAAGAAGAAGTG CACAAGTTGTTATTAGCATCTCAGGAACAAATTGAACAGTCAAAGGTGAA GGTAGGTCTTAAACTGCCAAGCAAGTTTCTGTTTACTACTGTATGTTCCA TCATATAGCACAATGACATTTCCAATTTTCATCTGTACTATTGATCTAGG ACACAGAACTTGACGTTCTCAAAGAACAATTCGGTCATCTCATTCAAGAA AGAGACGGGTGCGACACTTAACTCCCGAATCCATCTGTGCTTTTATTTCT AGTTGTAGCTGTTTAATCAAGGAAGCACCGAAAGTGCATCACAAATTATC TAATATTGATTTTATTCGTTTCTCTGCTTAAGCTTGCTTGATGACATGGA CCAAAGAAAGGCTGACCTGCTGGAGACCCAACTGCTCGTTGAGCAGCTTG AGCAGCGGGAGCAAATGCTTGAAGCCCAGAATGAAATGTTACAGGTTCAG ATAATCATTTCAATCTTCCAAAACATACCGTTCTTTCCAACCCTGCTTGT TTACAACAGCCATAGCTAGACTGACCTTTTGTGTTCCTGTAGATGGAGAA AGACAACCTCCAACAAAAGATGATGGAGATGGACGAGACCATCGAACTGC TAGAAGGTTCCAATCAATCCAGAGCAGGAACAATTCCCAGAATGGTGAAC ACCCCGGCCTCGCATTGCCACACTGCCAAACCCTCCAGCACTTGCGATTT CCTTTTCTGACAACCAAATGTGATCTTTTTTTCTCCACAGGGAGATAGCC AGCGCTCGGCCAGCAGTGAGTTCAGCAGGAGGCTGGCTCAATCGGACATG CTCGTCTCCCACGCGAGGCACGAGCGCTCCCGTAACCACGCGGCGGCGGC CGGGAGCTCAAGGACGCGCCATGGCAGACACCATTGA

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.