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GrainGenes Sequence Report: BE492937

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Sequence	BE492937
Contig	TaAffx.98426.1.S1_at NSFT03P2_Contig4889
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
wEST map position	BE492937
DB Remark	Locus Source: Triticum monococcum
Keyword	EST
Germplasm	T. monococcum ssp. monococcum DV92
Species	Triticum monococcum
Cultivar	DV92
Chromosome	1AS 1BS 1DS 3BS
Clone Library	Triticum monococcum vegetative apex cDNA library
Tissue	Vegetative shoot apex
Developmental Stage	Three weeks-old plants
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0563_B07_C13ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE0563_B07_C13, mRNA sequence.
Other Name	WHE0563_B07_C13ZE  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli XLOLR
DNA Library	TM011XXX
Clone	WHE0563_B07_C13
Probe	BE492937 WHE0563_B07_C13
Remark	DB_xref: taxon:4568 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene T3 primer. Note: Vector: Lambda pBK-CMV (Lambda Zap Express), excised phagemid; Site_1: EcoRI; Site_2: XhoI; The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised at the University of California, Davis (V. Echenique, B. Stamova , J. Dubcovsky). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda pBK-CMV (Lambda Zap Express), excised phagemid; Site_1: EcoRI; Site_2: XhoI; The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised at the University of California, Davis (V. Echenique, B. Stamova, J. Dubcovsky). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	TaAffx.98426.1.S1_at 781 WHE2AFFY [ Show all 8 ]
DNA	ggcacgaggcgagcgcgagttccaggccgaagtggagataattagccgtg tccatcaccggcatttggtgtctcttgtggggtactgcattgccaatagc cagaggctgctcgtctacgatttcgtgtccaatgacaccctgcattatca tctccacggacagggaaggcctgttttagactggtcggctagggttaaaa tcgctgccggtgctgctcgtggaatagcatacctgcatgaagattgtcat ccaaggattatccaccgagacatcaaatcctcaaacattttgttggataa taactttgacgcactggtggctgattttggacttgcaagattggctttgg atgctgtaacacatgtaactacccgggttatggggacatttggatacatg gctccagagtatgcatcgagtggcaaactgactgagaaatctgatgtgtt ctcttttggtgttgtactcttagagcttatgactggtcgaaagcctgttg attcatccagaccattgggcgatgagagccttgttgagtgggct

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