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GrainGenes Sequence Report: NSFT03P2_Contig12538

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Sequence	BE490715
Contig	Ta.13694.1.S1_a_at NSFT03P2_Contig12538
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC308506
wEST map position	BE490715
NCBI UniGene	Ta.13694
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001059232.1 Os07g0230700 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	6AS 6BS
Clone Library	Wheat cold-stressed seedling cDNA library
Tissue	Seedling
Developmental Stage	Five-day old seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0369_C11_F21ZS Wheat cold-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0369_C11_F21, mRNA sequence.
Other Name	WHE0369_C11_F21ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA007E1X
Clone	WHE0369_C11_F21
Probe	WHE0369_C11_F21
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.13694.1.S1_a_at 696 WHE2AFFY Ta.13694.1.S1_a_at 214 WHE2AFFY Ta.13694.1.S1_a_at 111 WHE2AFFY
DNA	tcccctgtcccattcgacaaaacacgccaagcacgcgcaccgaatccatc gccgagcaagcgaagcagacaccacctgtccagaccgccgcccaccgtct cccaggagctcagaggcgccaccaagaaccgcacggaagcagccggagca agcggcacgtgagaggatcgatggcgatggccggcggagccccgccggcg ccgctgccggtggtggggcaccagttctgcgcgccctacgtggtgccgct cacggtgaccaagaaggccctcagcctctccgacggcgacttcgccatca cggacgccaacggcgccgtcgtgctcaaggtcaagggcgccatcttcagc atccggagccgccgcaccatcctcgacggcgccgggatgcccctcctcac catgcaggaaaaggtgttcagcatgcaccaccgatgggaggtgttcagag gggacagcaccaacgcaggcgacctgctcttcaccgtgaagacaacttcg ctgatccaactcaagacggagatggatgtcttcttggccgggaacaccgc gcagc

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