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GrainGenes Sequence Report: BE488911

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Sequence	BE488911
Contig	TaAffx.95561.1.S1_at NSFT03P2_Contig10573
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC303089
NCBI UniGene	Ta.32642
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001057843.1 Os06g0553100 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Clone Library	Wheat unstressed seedling shoot normalized cDNA library
Tissue	Etiolated shoot
Developmental Stage	Five day old seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE1077_G04_N07ZS Wheat unstressed seedling shoot normalized cDNA library Triticum aestivum cDNA clone WHE1077_G04_N07, mRNA sequence.
Other Name	WHE1077_G04_N07ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli DH10B
DNA Library	TA006E2N
Clone	WHE1077_G04_N07
Probe	[Wcl896ct1766cn2358] {SpCl-268} BE488911
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. The cDNA clones were in vivo excised to give pBluescript phagemids before normalization was carried out. The mass excision of phagemid library and normalization were done in HT Nguyen lab by D. Zhang at Texas Tech Univeristy. Normalization protocol used was that of Soares'. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA	ccctcctcccgttactttatcaagaaatctcaggacaaatcttgagaaac tttagttagagacagaccgatggcggcggcggcggcgagcgtcggaggcg gggcggcgccgttcgtgtggaagacgtaccggatggtggaggaccccggg acggacggggtcatcgggtgggggaagggcaacaacagcttcgtcgtcgc cgaccccttcgtcttctcgcagaccatgctgcccgcgcacttcaagcaca acaacttctccagcttcgtccgccagctcaacacctatggcttccgcaag gtggatccggaccggtgggagttcgcccacggctccttcctccggggcca gacgcacctcctgcgcaacatcgtccgccgtggcaccgccgtcggcggcg gcggcggcggcaagcgcaaggacgcggtggcggccggcctcaccgacgac gacatgacgatggtcgccacggaggtggtgaggctgaagaaggagcagaa caccatcgacgacagggtggccgccatgtggcgccgcgtgcaggagaccg agcggaagcccaagcagatgctcgcgttcctcctcacggtcgtcggcgac cgcgacacgctgcagcgcctggtcggcaacagcggc

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