GrainGenes Sequence Report: BE471260
Sequence
BE471260
Contig
Ta.4601.1.S1_s_at NSFT03P2_Contig18157
Tracefile
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External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC345344
NCBI UniGene
Ta.15761
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001055949.1 Os05g0498400 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Clone Library
Wheat drought-stressed seedling cDNA library
Tissue
Seedling without endosperm
Developmental Stage
Five day old seedling
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0286_B02_D04ZS Wheat drought-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0286_B02_D04, mRNA sequence.
Other Name
WHE0286_B02_D04ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA005E1X
Clone
WHE0286_B02_D04
Probe
[Wcl75ct267cn384] {SpCl-14}
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were incubated for one day at 90% RH. After removing endosperm, seedlings were transferred to desiccator jar containing saturated MgSO4 at room temperature for 24 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were incubated for one day at 90% RH. After removing endosperm, seedlings were transferred to desiccator jar containing saturated MgSO4 at room temperature for 24 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
aaccttaatctgttcggtgccagtcaaacctcaacaacaaagtttcatgt
ctgatctcgacgttactctgccatctgccttcgatccttttgctgaggca
aatgctgaggatgctggtgcaggccccggcgcaaaagattatgtgcatgt
gcgcatccagcagcgcaacggcaggaagagtctgaccactgtccagggcc
tgaagaaggagttcagctacaacaagatcctcaaggatctcaagaaggaa
ttctgctgcaatggcacagtagtccaggatccggagctaggccaggtcat
tcagcttcagggtgatcagcgtaagaatgttgctactttcctagtccagg
ctgggattgcgaagaaggagctcatcaagatccacggcttctaagcctta
gccgcctccgataaatgctcgaaccgccagccagttcttctctatattga
agacataaggcatatatactgccgcccgcttgttgaaccgtgtcttgctt
gatgcaagttgtgttgtcacctgattactatgctgctgcagtaccagcat
atcagtatggtttgtctaagatgttgccgactaaataaaaatctgtatcg
tttg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BE471260
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