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GrainGenes Sequence Report: BE443404

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Sequence	BE443404
Contig	Ta.28689.1.S1_at Ta.28689.3.S1_a_at TaAffx.24997.1.S1_s_at NSFT03P2_Contig16938
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC293582
wEST map position	BE443404
NCBI UniGene	Ta.56616
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001041976.1 Os01g0139200 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	3AS 3BS 3DS
Clone Library	Wheat etiolated seedling root normalized cDNA library
Tissue	Root
Developmental Stage	Five day old etiolated seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE1104_E10_J20ZS Wheat etiolated seedling root normalized cDNA library Triticum aestivum cDNA clone WHE1104_E10_J20, mRNA sequence.
Other Name	WHE1104_E10_J20ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli DH10B
DNA Library	TA008E3N
Clone	WHE1104_E10_J20
Probe	WHE1104_E10_J20
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. The cDNA clones were in vivo excised to give pBluescript phagemids before normalization was carried out. The mass excision of phagemid library and normalization were done in HT Nguyen lab by D. Zhang at Texas Tech Univeristy. Normalization protocol used was that of Soares. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.28689.1.S1_at 862 WHE2AFFY [ Show all 8 ]
DNA	cttgttgacagcgtaccgaagccaaccgtgccgattcctcagcaatatat gaagcctgaattgcagcagcctggcatgtaccgaaccgcggcgcccgctg cccctgctccaggggctaacacggcccctaattatgctggaatggggtac caccatgtaatgcaatcccaccaccatcctgcatcgcagcctccgccgac catggcgggaaactatgggtaccccgagtatgctgctgatccccgcgcac aggtattctactcccaggcaggagcaccaccagcatcattgccgcctcag tatcagctgcccatgggagcacctgatgccagcggtcaggctgacatgaa tcagaaccgtggtggttcatagcgaaggacgggtgaattctcttattctg cgtatcctaaaggtaaacctgctgttacttatcattattgttattacaag ttgcgcgagtcgatcaaacattggatggtgtgattgggcagttgcgcatt

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