Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: BE426408

[Submit comment/correction]

Sequence	BE426408
Contig	NSFT03P2_Contig14031
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC302745
NCBI UniGene	Ta.28381
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Heat shock protein 16.9C'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Clone Library	Wheat unstressed seedling shoot cDNA library
Tissue	Etiolated shoot
Developmental Stage	Five day old seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0334_B01_C02ZS Wheat unstressed seedling shoot cDNA library Triticum aestivum cDNA clone WHE0334_B01_C02, mRNA sequence.
Other Name	WHE0334_B01_C02ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA006E1X
Clone	WHE0334_B01_C02
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Shoots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Shoots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.14573.1.S1_at 607 WHE2AFFY Ta.14573.1.S1_at 531 WHE2AFFY Ta.28381.2.S1_a_at 165 WHE2AFFY TaAffx.121290.1.A1_at 103 WHE2AFFY TaAffx.121290.1.A1_at 56 WHE2AFFY
DNA	gtcccaaaacctcagcagctccgtcccgatggcgtcgctcaccatgatgg cgtccctctccgcggccgtggcggtcgaccggcgcgcggccgccccacgc cgcggcctcgtggtggcccgggccgccaaggtcgagagccagcaggagcc ggcggccaagatggcagccgtggagcccgccaccgacggccgccgtgccg tggtgtttgctgccgccgctgcggccttgtcggccattggcggggtggcc ttcgccgagtcggacgtcaagaaggggagccccgaggccaagaagaagta cgcccccgtctgcatcaccatgcccaccgccaagatctgccacaactgat ccggggtgaggggacgatgatgatgcgggtgggcggtaaatattgtacta cgtacggttttatctcttgtcgaagttcgagcttaaatgcatagggccgc gttgcgtgcgcttggacgccgccatggacggtctctaatgttgttgtatt atccattgcaaattcgaggtgaaaccgcacttgttt

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.