Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: BE425645

[Submit comment/correction]

Sequence	BE425645
Contig	Ta.14172.1.S1_at NSFT03P2_Contig8835
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC289906
NCBI UniGene	Ta.14172
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, weakly similar to NP_001049167.1 Os03g0180900 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Clone Library	Wheat unstressed seedling shoot cDNA library
Tissue	Etiolated shoot
Developmental Stage	Five day old seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0322_F09_F09ZS Wheat unstressed seedling shoot cDNA library Triticum aestivum cDNA clone WHE0322_F09_F09, mRNA sequence.
Other Name	WHE0322_F09_F09ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA006E1X
Clone	WHE0322_F09_F09
Probe	[Wcl993ct1873cn2473] {SpCl-1216} CFE90
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Shoots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Shoots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA	tttcctctcctgcccgcgaacagaattaggcctcgcccagctgtacacgc ccacaaaaggagagagccggccaggacttaaccccgcgagtcgcccgcct cccggccggacggacaggcagaagacgcacacacgcgcacacatacctcg ccggacctcgtcgtttctttccgctggggatcgacatgggagccgagcag cagcagcagcagcaggccgccgggggcagcaggttcgccgcggcgttcgg cctgctgcgccagtacatgagggagcagcctggcgccggcggcggtggca tggtgaccgtgggcctcatgccgggcgggcggcgtcgacggcgtcgacgc ggtggcgcccgagcagaggatccggaccatggagctcttcccccagcagg ccggcacggtcaggggctcgcacgagaggacggggcctgagagagcgccg ctgaccatcttcttcggcgggaggacgttcgtgttcgacgacttccccgc cgaaaaggccagggagatcatgcagctcgccggctccttctgcgcgccgc cgcccgtgtccgacgccggcg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.