GrainGenes Sequence Report: BE424987
Sequence
BE424987
Contig
Ta.6020.1.S1_x_at Ta.6020.2.S1_a_at NSFT03P2_Contig3334
Tracefile
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External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC312492
wEST map position
BE424987
NCBI UniGene
Ta.6020
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001055009.1 Os05g0243300 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
6AL
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0079_H12_O23ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0079_H12_O23, mRNA sequence.
Other Name
WHE0079_H12_O23ZS [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0079_H12_O23
Probe
MAG1450 WHE0079_H12_O23
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.6020.1.S1_x_at 270 WHE2AFFY Ta.6020.1.S1_x_at 196 WHE2AFFY Ta.6020.2.S1_a_at 76 WHE2AFFY Ta.6020.2.S1_at 76 WHE2AFFY
DNA
cgcacgacaatcttatcaagctttgttaaggcagcaagatagattgctga
gatgcctgttcagttgagttgagttgagaggcactaaacctggaaacgct
caactcctcattctgaatttccttttcgatcctaaacctgtaactggaat
tttgtgttgcaaataaaactcgatgcattatgcagaacctcgtgccg
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BE424987
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