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GrainGenes Sequence Report: BE424934

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Sequence
BE424934
Contig
Ta.9412.1.S1_at
NSFT03P2_Contig16454
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC317202
wEST map position
BE424934
NCBI UniGene
Ta.9412
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001052061.1 Os04g0118900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
5AS
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0088_A01_A02ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0088_A01_A02, mRNA sequence.
Other Name
WHE0088_A01_A02ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0088_A01_A02
Probe
MAG687
WHE0088_A01_A02
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.9412.1.S1_at920WHE2AFFY
Ta.9412.1.S1_at835WHE2AFFY
DNA
ttttttgtcaaatgcaggtctaacttcttataacacacgacgacaaagca
gttgtcaaaggacaggtccagcttcttataacacgatgtcagctaaacga
taagcttcggtacgggtacagaagggttcttgtttactaatgctagagct
agaacagcatatggaaaccgcctcgctaccataaaccgagataactgtcc
atcagtcataacctcttctgttgggagctggggatcttgagcgctggaca
ggagatcggcttcgatagcgatcacgaacagggctcctgctcctgccata
tgcaccatactgaggactcgctggacggccatagtcaggactaggtcgtg
accttcggtacattgggctgacagaacggcgatatgaactgtcatcctgc
cttccatagccaccacctctacttggcctgtcatacttgtcacctggttc
actgtcatccctgaaggcatactcaacagaaatcactctgtccagtaact
tcgtcaaatgagtagcatctagcgcttttgaggcttcttcctgtgtttca
aattgcacgaaagcaaagttcttc

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