Query (optional)   in Class  

GrainGenes Sequence Report: BE424775

[Submit comment/correction]

Sequence
BE424775
Contig
Ta.1305.1.S1_a_at
Ta.1305.1.S1_at
Ta.1305.1.S1_x_at
NSFT03P2_Contig10419
Tracefile
[ Download ]
[ View ]
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC286187
wEST map position
BE424775
NCBI UniGene
Ta.54611
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_172848.1 EIF-5A (eukaryotic translation initiation factor 5A-1); translation initiation factor [Arabidopsis thaliana]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
5DS
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0089_B12_D23ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0089_B12_D23, mRNA sequence.
Other Name
WHE0089_B12_D23ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0089_B12_D23
Probe
WHE0089_B12_D23
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.1305.2.S1_x_at648WHE2AFFY
[ Show all 17 ]
DNA
tttttttttttttgaattgcaagtctatttttcttcatcttataagcaca
atttacctccacactggaacaccaaaagcaccaatagtcaagaggggtca
ataaaccccggagcgacagttttaggatacagtcacccatgaatttagga
ctacaaatcaaccaaacactgacaacttagttgtgcaaaaagatacaatt
cctcaacggctgtgacacccaaatccatcttaaccggcagagacaaatga
accacactcttggggccgatgtccatggctaacagggcagactacttggg
gccaatgtccttgagcgcattaatctgctcctctcccatggcggacatga
cagacaccaccaggtccttcccttcagcaaacccatccttgatctggcca
aggagggtttcatcagtcgggagcttgaggtcatctttggtgttaccatt
atcagtgagcagactcacaaatccatcctcagatatatcaatgagctggt
attctgtgcgattcacatg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.