Query (optional)   in Class  

GrainGenes Sequence Report: NSFT03P2_Contig18232

[Submit comment/correction]

Sequence
BE424602
Contig
Ta.2430.3.S1_a_at
NSFT03P2_Contig18232
Tracefile
[ Download ]
[ View ]
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC347918
wEST map position
BE424602
NCBI UniGene
Ta.2430
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001062938.1 Os09g0346400 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
5AL
5BL
5DL
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0085_H01_P01ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0085_H01_P01, mRNA sequence.
Other Name
WHE0085_H01_P01ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0085_H01_P01
Probe
WHE0085_H01_P01
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.2430.2.A1_at385WHE2AFFY
Ta.2430.2.A1_at343WHE2AFFY
Ta.2430.3.S1_a_at234WHE2AFFY
Ta.2430.3.S1_a_at190WHE2AFFY
DNA
gcaatctattctccactttaaagtcaactgagttcactggcagtatatag
actctcaagtcccggacgaaattaactgtgccaaccaaaattaactgcaa
ctttttatccgactccacccaacaaacagaacagaaacgaatagcttctc
cagacttttcagttcattcaggtctaggcagaccacgcactctgttgctc
tcacctgcaaaattggtctagtaagattcatactcgagggcggcgggtgc
acaggcctccttttccttccatcagttgctggtgctcgccgggcggtagt
actggtagtagcccagcgccgcaagcagggcgacgagcacggtgacggcg
gatatcatcacggctggggtggcccatgaccggtacgactgggctttctt
cctcttcaggatcgcctttg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.