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GrainGenes Sequence Report: BE424100

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Sequence
BE424100
Contig
Ta.10890.1.S1_at
Ta.10890.3.S1_a_at
NSFT03P2_Contig16872
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC296025
wEST map position
BE424100
NCBI UniGene
Ta.10890
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001064942.1 Os10g0494000 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
1AL
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0076_H08_O16ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0076_H08_O16, mRNA sequence.
Other Name
WHE0076_H08_O16ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0076_H08_O16
Probe
WHE0076_H08_O16
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.10890.1.S1_at652WHE2AFFY
Ta.10890.3.S1_a_at581WHE2AFFY
Ta.10890.3.S1_a_at517WHE2AFFY
TaAffx.8577.1.S1_at46WHE2AFFY
DNA
tggccggctgtccaatgacgcgtggcaccatgccgacgccgacagcgtcg
agtacttcaacctcgccgacctgtgggagcagtactacgagtggagcgcg
tacggcgccggagccaccgtgcagctgcacggaggggacaaaggggttca
gtactacgtcccgtacttgtcagggatacagctatacaccaacaaagtcc
tgaatgcgtccaggagttttggtgaggattatggcatggacttctggagc
gatgatgacgaccatgagaagatgtcaagatcctggagttcaacatctga
cgactcatttaactgcaacgtggtatgggggaacaggaggcgacctgacc
atttgtactttgagttctttgaa

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