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GrainGenes Sequence Report: BE422609

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Sequence
BE422609
Contig
Ta.4549.1.S1_at
Ta.4549.2.S1_a_at
Ta.4549.3.S1_a_at
NSFT03P2_Contig14055
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC284492
wEST map position
BE422609
NCBI UniGene
Ta.4549
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, weakly similar to NP_973963.1 SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
6AL
6BL
6DS
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0057_H11_P21ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0057_H11_P21, mRNA sequence.
Other Name
WHE0057_H11_P21ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0057_H11_P21
Probe
MAG1449
WHE0057_H11_P21
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.4549.1.S1_at920WHE2AFFY
Ta.4549.1.S1_at581WHE2AFFY
Ta.4549.3.S1_at74WHE2AFFY
Ta.4549.3.S1_a_at74WHE2AFFY
DNA
tattctgatttcatttacagtactgttcaagctctttatcttaaagttca
caatgtccaactgcacatagccaacaagtttatgaaaacaccaaaggggt
tgagatcaaacgtgaatctaaattcgctganacagggaaggagctcctgg
gaagtcccatgcccaagctgcgaaatttccattcaccttgaggcctcact
caggggagaatatgtgtgtgtttcctcatggcatggtccacaattccagg
tgatgtttctttctttccaagaagaatgaggatcttattttgcgagttga
ctgctcgtatgtatgctcgacgtgccttagggacgcctagatctttcgta
gatctccttatgaagtaagaagacatccccttgatcgctgttgaacgcac
gtagctcagagctgcataccgtgagctgcctcagtaacttctccagacac
gagtaaaggcagctctctggatccttattttggggttcgtcgacaggatg
gcagcattcaccgcgtccgctacaaattcacgctgtggggac

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