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GrainGenes Sequence Report: Ta.8860.2.S1_a_at

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Sequence
BE406023
Contig
Ta.8860.2.S1_a_at
NSFT03P2_Contig15337
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC290829
NCBI UniGene
Ta.8860
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001046315.1 Os02g0219900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Clone Library
Wheat etiolated seedling root cDNA library
Tissue
Root
Developmental Stage
Five day old etiolated seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0405_h06_h06zB Wheat etiolated seedling root cDNA library Triticum aestivum cDNA clone WHE0405_h06_h06, mRNA sequence.
Other Name
WHE0405_h06_h06zB  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA008E1X
Clone
WHE0405_h06_h06
Probe
[Wcl897ct1767cn2359]
{SpCl-1011}
BE406023
CFE297
CFE298
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Strategene pBluescript SK reverse primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
aggagtcttcctcgacccggacctctctgttcaccgcacacgattagcag
gggcagcggcgaggaagatgacgacgacgacgacgacgacaaggaagaga
cccttgacggtccctgagatggcgctgagggtgtgcgtgatccccctcgc
cttggcctccctgtgggagatggccaccaacaagcaagccgatgacacct
acggggagatcagcttctccaacctctccggcttcaagtatttagttttc
attaacgctgtcactgccgcctattccgtggtctccatcctgatgtcatc
cttcaagtccctcgctcgctacgattggctcattttcctcctggatcagg
cggcggcgtacc

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