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GrainGenes Sequence Report: Ta.1623.2.S1_x_at

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Sequence	BE405552
Locus	XBE405552
Contig	Ta.1623.2.S1_x_at NSFT03P2_Contig15983
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC284063
wEST map position	BE405552
NCBI UniGene	Ta.56296
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, weakly similar to NP_001046469.1 Os02g0256200 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	3DL
Clone Library	Wheat etiolated seedling root cDNA library
Tissue	Root
Developmental Stage	Five day old etiolated seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE1212_F06_L12ZS Wheat etiolated seedling root cDNA library Triticum aestivum cDNA clone WHE1212_F06_L12, mRNA sequence.
Other Name	WHE1212_F06_L12ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA008E1X
Clone	WHE1212_F06_L12
Probe	WHE1212_F06_L12
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Strategene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.1623.2.S1_x_at 482 WHE2AFFY [ Show all 35 ]
DNA	atgaacctgttcggacgcttccaccaccgccaccatcttcgtcaccatca cgaccaggacgtggaggaggaggacgaccaccagcaggacaaggatgaag gcccgaagatgaagctgttccgacgtttccaccaccaccacgcgcatgac agcgacaacgaggtcgacgaggtggaagaactggctaggaggctgagcga ggcgatcatgagaaggaggttcagccatggcggcccccgccagcaccacc accaccaccatggagcggagggcggggtgaagaactggttcaagggcctc atgaaccgattctagacgtaccgccggccggcggctggttgatttggtcg tttagttactttggttaatctgttcgctgcactgtgtgcgtgacgtggag tgctctgccatttcgtactacctttttttttttgcttcctattccacatt acattaccacttgggtttgtgtactgctgtgttagtttactcgtgagggt tggtagattgtacgagcagcaatgtgtttttctgcagattaactaataca tttgccttgttaaaaaaaaaaaaaaaaaaaac

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