Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: BE403624

[Submit comment/correction]

Sequence	BE403624
Contig	Ta.5557.1.S1_x_at NSFT03P2_Contig17865
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC277702
wEST map position	BE403624
NCBI UniGene	Ta.55548
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001061158.1 Os08g0189300 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	3BS 7AL
Clone Library	Wheat etiolated seedling root cDNA library
Tissue	Root
Developmental Stage	Five day old etiolated seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0434_G07_M14ZS Wheat etiolated seedling root cDNA library Triticum aestivum cDNA clone WHE0434_G07_M14, mRNA sequence.
Other Name	WHE0434_G07_M14ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA008E1X
Clone	WHE0434_G07_M14
Probe	WHE0434_G07_M14
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Strategene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.5557.1.S1_x_at 1243 WHE2AFFY [ Show all 25 ]
DNA	gcttcctcttcctcttgtttctccttgcagccctccttgcgctggcctca tggcaggccactgcctatgatcctagccctcttcaggacttctgcattgc cgacatgaaggcgcctgtgcgagtaaatggatttgcttgcaaggacccaa tggccgcaaccccggaagacttcttcaacgcagccatgctcgatcagcct agggatactaaggcgagcaaggtcaggtctaacgtcaccaacatcaatgt tataaatttccccggcctcaacaccctcggcatctcgttggcacgcatcg actatggaccattaggtgtgaacacgccacacatacaccctcgtgccact gagctcctcacggtgctcgaggggacactctaccttggatttgtcacatc caacccaaacaggctcttctcaaagatagttaagaagggtgatgtattcg tattcccaaaagcaatgatccacttccaaatgaacctagcgcatgacaag ccagcagccgcgttgtcctcgctcagcagccaaaaccctggagttatttc tattgccaatgcagtgtttggatcaaagccaccgatttcggatgatgtct tagccacggcatttcaggtggagaaggatctgattcactggcttcaatct cagttctgggggaacaccaactactaaatattctcttttatctggg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.